AprilYuge / ResPAN
a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction
☆13Updated last year
Related projects ⓘ
Alternatives and complementary repositories for ResPAN
- ☆10Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Single Cell Consensus Clustering with Speed☆19Updated last year
- Regulatory networks with Direct Information in python☆38Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 2 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago
- Using BCR and expression for sequence embedding☆19Updated 3 weeks ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆20Updated 3 years ago
- benchmark for single-cell RNA-seq imputation methods☆23Updated 8 months ago
- Dynamical systems methods for RNA velocity analysis☆23Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆19Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated last month
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆20Updated 2 months ago
- Summary statistics for repertoires☆16Updated last year
- Variant impact phenotyping using Perturb-seq☆9Updated 7 months ago
- ☆45Updated 2 months ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 3 weeks ago
- ☆26Updated last year
- Code related to scRNA analysis using the scAmpi workflow☆24Updated 2 weeks ago
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆11Updated 8 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- High-definition modeling of chromatin + transcriptomics data☆18Updated 2 weeks ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- A post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping☆23Updated 2 months ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆12Updated 2 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆20Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated last month
- ☆17Updated last month