Alternatives and similar repositories for ResPAN:

Users that are interested in ResPAN are comparing it to the libraries listed below

• const-ae / transformGamPoi-Paper
  ☆27Updated last year
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 2 years ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 6 months ago
• SydneyBioX / CiteFuse
  CiteFuse:
  ☆28Updated 2 years ago
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆23Updated 9 months ago
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆25Updated last year
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated 6 months ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 2 years ago
• KlugerLab / ALRA-paper
  ☆9Updated 3 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• cailab-tamu / scTenifoldNet
  A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
  ☆23Updated 3 months ago
• TheHumphreysLab / MALDIpy
  MALDIpy: a Python package for single-cell analysis of imaging mass spectrometry data (Cell Metabolism 2024)
  ☆13Updated 10 months ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆10Updated 6 months ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆26Updated last month
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆16Updated 2 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 4 years ago
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆24Updated last month
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• Center-for-Health-Data-Science / multiDGD
  ☆24Updated 3 months ago
• marcovito / sma
  ☆13Updated last year
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆14Updated 3 years ago
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆21Updated 2 years ago
• ajaynadig / TRADEtools
  ☆11Updated last month
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆23Updated last week
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆21Updated last year
• xinhe-lab / GSFA
  R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …
  ☆19Updated last year
• PMBio / scNMT-seq
  single-cell Nucleosome Methylation Transcription
  ☆13Updated 7 years ago
• Teichlab / limbcellatlas
  This repository contains codes used for the human fetal limb cell atlas.
  ☆16Updated 2 months ago