On synteny plots, intrinsic tangledness is real, layout tangledness is noise. This tool is for removing layout tangledness.
☆22Oct 24, 2026Updated this week
Alternatives and similar repositories for SynTangle
Users that are interested in SynTangle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆18May 27, 2024Updated 2 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆33Jul 9, 2026Updated 3 months ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 3 years ago
- ☆16Oct 8, 2026Updated 3 weeks ago
- A Landscape Genomic Analysis Toolkit in R☆23Aug 28, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- tandem repeat finding from erroneous long reads☆15Jun 30, 2026Updated 3 months ago
- ☆15Sep 1, 2026Updated last month
- ☆10Feb 27, 2026Updated 8 months ago
- TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix…☆24Jun 21, 2023Updated 3 years ago
- microhaplotype visualizer and analyzer☆23Jun 24, 2021Updated 5 years ago
- Open Software for Teaching Evolutionary Biology at Multiple Scales Through Virtual Inquiries☆13Apr 1, 2026Updated 6 months ago
- R Interface to CoreArray Genomic Data Structure (GDS) Files (Development version only)☆20Oct 11, 2026Updated 2 weeks ago
- filtering SNPs based on LD and HWE status☆10Jul 3, 2023Updated 3 years ago
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆34Jun 1, 2022Updated 4 years ago
- Benchmark data structures for kmer sets.☆13Aug 29, 2026Updated 2 months ago
- Tools for Classifying DNA Sequences☆10Oct 21, 2026Updated last week
- Freezer management & sample tracking system☆14Updated this week
- Toolkit for evolutionary analyses of linkage groups☆35Jul 17, 2024Updated 2 years ago
- R package to fit integrated SDM models (with PO, PA and abundance data)☆12Apr 15, 2026Updated 6 months ago
- ☆33Jul 9, 2024Updated 2 years ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jul 6, 2026Updated 3 months ago
- R functions for conversion of genetic data formats☆12May 17, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ARA.v1.6.0☆10Jun 9, 2024Updated 2 years ago
- An R package to repair broken GIS polygons using the prepair (https://github.com/tudelft3d/prepair) Cpp library - mirror to the Gitlab re…☆12Nov 9, 2022Updated 3 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 7 years ago
- ☆12Jul 24, 2026Updated 3 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Estimating evolutionary coevality☆11Jul 16, 2026Updated 3 months ago
- Spatio-temporal trends in habitat suitability from ecological niche models☆16Feb 4, 2026Updated 8 months ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆13Feb 17, 2025Updated last year
- ☆21Dec 5, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Quality control for phylogenetic analyses☆13Oct 19, 2026Updated last week
- Tools for Gene Expression Quantification in Polyploid Species☆13Sep 29, 2025Updated last year
- Jaeger is a quick and precise tool for detecting viruses in sequence assemblies.☆10Oct 14, 2026Updated 2 weeks ago
- CladeDate: Empirical calibration density generator for divergence time estimation☆10Feb 22, 2026Updated 8 months ago
- The official Bento distribution - orchestration and deployment infrastructure for the Bento platform.☆12Updated this week
- ☆10Aug 21, 2025Updated last year
- Genotyping of STRs with long reads☆12Oct 19, 2026Updated last week