☆10Aug 21, 2025Updated 6 months ago
Alternatives and similar repositories for DiffSegR
Users that are interested in DiffSegR are comparing it to the libraries listed below
Sorting:
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆25Feb 9, 2026Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 4 months ago
- A tool to extract and annotate genes from raw RNA-seq reads.☆10Dec 20, 2024Updated last year
- Impute DNA methylation from WGBS data.☆11Apr 23, 2019Updated 6 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆35Mar 5, 2026Updated 2 weeks ago
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).☆21Sep 9, 2021Updated 4 years ago
- ☆14Mar 6, 2026Updated 2 weeks ago
- ☆32Dec 16, 2022Updated 3 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆16May 27, 2024Updated last year
- a python package for automated generation of phylogenetic trees from genbank files☆23Nov 11, 2025Updated 4 months ago
- ☆10Feb 27, 2026Updated 3 weeks ago
- Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.☆10Apr 29, 2022Updated 3 years ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Aug 26, 2025Updated 6 months ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆49Apr 24, 2024Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆47Apr 3, 2025Updated 11 months ago
- Processed E-MTAB-3610 dataset - Transcriptional Profiling of 1,000 human cancer cell lines☆11Dec 23, 2021Updated 4 years ago
- ☆45Oct 29, 2022Updated 3 years ago
- an R package for deep mining gene co-expression networks in multi-trait expression data☆21Jan 23, 2026Updated last month
- ☆27Mar 5, 2026Updated 2 weeks ago
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆17Jan 24, 2026Updated last month
- A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data☆17Jan 16, 2026Updated 2 months ago
- Here we present a method to plot the outputs of RFMIX version 2☆31Aug 14, 2024Updated last year
- Strand and WGD aware syntenic gene identification☆15Oct 16, 2025Updated 5 months ago
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆14Jul 23, 2020Updated 5 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- A set of functions to facilitate manipulation of tibbles produced by broom☆25Nov 14, 2025Updated 4 months ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 3 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 3 months ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- Some useful gadgets☆11Mar 14, 2022Updated 4 years ago
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆25Sep 19, 2016Updated 9 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆57Aug 6, 2023Updated 2 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- A suite of methods and models for studying evolutionary radiations☆25Feb 22, 2023Updated 3 years ago
- ☆10May 21, 2024Updated last year