czi-hca-comp-tools / easy-data
easy access to benchmark datasets
☆49Updated 6 years ago
Related projects: ⓘ
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Updated 5 years ago
- ☆28Updated last year
- post-clustering differential expression test☆35Updated 5 years ago
- ☆29Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- ☆53Updated 6 months ago
- Normalization for single cell RNA-seq data☆47Updated last year
- Single Cell Epigenome-based Inference of Activity☆19Updated 11 months ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆36Updated 6 years ago
- scNMT-seq gastrulation☆41Updated last year
- ☆35Updated 8 years ago
- Dynamic models for single-cell RNA-seq time series.☆39Updated 5 years ago
- An R package to construct Elastic Principal Graphs☆22Updated 4 years ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 2 years ago
- Discrete Distributional Differential Expression☆22Updated 5 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 3 years ago
- ☆19Updated 7 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆43Updated 8 years ago
- Multi-omics studies are available here☆50Updated 2 years ago
- ☆36Updated 3 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 5 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆47Updated 6 months ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆45Updated 4 years ago
- ☆22Updated 4 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆44Updated 2 months ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 4 years ago
- ☆33Updated 5 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 5 years ago