czi-hca-comp-tools / easy-dataLinks
easy access to benchmark datasets
☆50Updated 7 years ago
Alternatives and similar repositories for easy-data
Users that are interested in easy-data are comparing it to the libraries listed below
Sorting:
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Normalization for single cell RNA-seq data☆50Updated 7 months ago
- ☆55Updated 10 months ago
- consistent quantification of external RNA-seq data sets☆58Updated 2 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 7 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- ☆29Updated 2 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- ☆28Updated 6 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Updated 6 years ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆77Updated 4 years ago
- Discrete Distributional Differential Expression☆22Updated 7 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆85Updated 3 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Updated 5 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆46Updated 9 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- ☆21Updated 8 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Single-cell Hierarchical Poisson Factorization☆74Updated 3 years ago
- ☆69Updated 7 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Updated 10 months ago
- ☆43Updated 2 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Updated 7 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago