czi-hca-comp-tools / easy-dataLinks
easy access to benchmark datasets
☆50Updated 6 years ago
Alternatives and similar repositories for easy-data
Users that are interested in easy-data are comparing it to the libraries listed below
Sorting:
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- ☆55Updated 5 months ago
- Normalization for single cell RNA-seq data☆48Updated last month
- consistent quantification of external RNA-seq data sets☆58Updated last year
- post-clustering differential expression test☆35Updated 6 years ago
- ☆29Updated 2 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆84Updated 3 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- ☆28Updated 6 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Updated 7 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 4 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Multi-sample Unified Discriminant ANalysis☆73Updated 2 years ago
- ☆20Updated 8 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Single-cell Hierarchical Poisson Factorization☆72Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- ☆62Updated 4 months ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 11 months ago
- ☆23Updated 6 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- Discrete Distributional Differential Expression☆22Updated 6 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year