czi-hca-comp-tools / easy-dataLinks
easy access to benchmark datasets
☆50Updated 6 years ago
Alternatives and similar repositories for easy-data
Users that are interested in easy-data are comparing it to the libraries listed below
Sorting:
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Normalization for single cell RNA-seq data☆48Updated last month
- ☆55Updated 4 months ago
- post-clustering differential expression test☆35Updated 6 years ago
- ☆29Updated 2 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- ☆28Updated 6 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Discrete Distributional Differential Expression☆22Updated 6 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Updated 7 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆84Updated 2 months ago
- Single-cell Hierarchical Poisson Factorization☆70Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 9 months ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- Multi-sample Unified Discriminant ANalysis☆73Updated 2 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 10 months ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- ☆19Updated 8 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- ☆43Updated last year
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆45Updated 4 years ago