lskatz / lskScriptsLinks
A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if anything leaves in the future.
☆17Updated last month
Alternatives and similar repositories for lskScripts
Users that are interested in lskScripts are comparing it to the libraries listed below
Sorting:
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated 2 months ago
- Split Kmer Analysis☆66Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆48Updated last week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆52Updated last month
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- SeqSero2☆39Updated 3 months ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆60Updated last week
- ☆33Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated this week
- Recombination-free trees☆64Updated 4 months ago
- Strain Resolution ON Graphs☆49Updated 2 years ago
- Code Safety Inspection Service☆20Updated 3 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- all methods related to Enterobase☆44Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- Intra-species bacterial contamination detection☆25Updated 10 months ago
- Mapping-Assisted Targeted-Assembly for Metagenomics☆24Updated 9 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆67Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago