lskatz / lskScriptsLinks
A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if anything leaves in the future.
☆17Updated last month
Alternatives and similar repositories for lskScripts
Users that are interested in lskScripts are comparing it to the libraries listed below
Sorting:
- A tool for removing redundant genomes from a set of assemblies☆76Updated last week
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆52Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last week
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆38Updated 3 months ago
- Prophage Activity Estimator☆26Updated last year
- Code Safety Inspection Service☆20Updated 2 years ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- all methods related to Enterobase☆43Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆75Updated 2 months ago
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- Mapping-Assisted Targeted-Assembly for Metagenomics☆23Updated 5 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆58Updated last year
- ☆34Updated last year
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆57Updated this week
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- ☆33Updated last year
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- ☆37Updated 3 years ago
- Recombination-free trees☆60Updated 2 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago