umccr / cwl-icaLinks
A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide
☆12Updated this week
Alternatives and similar repositories for cwl-ica
Users that are interested in cwl-ica are comparing it to the libraries listed below
Sorting:
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆15Updated 4 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆24Updated last month
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 3 months ago
- CWL for GDC DNASeq workflows☆22Updated last month
- A translator from WDL to CWL v1.2☆27Updated last week
- Workflow Execution Service Backend☆18Updated this week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆45Updated 2 years ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- a place for GA4GH-related wiki pages☆16Updated 8 years ago
- APIs for discovering genomics tools, their metadata and their containers☆31Updated 2 weeks ago
- ☆13Updated 7 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…☆24Updated 4 years ago
- Python Phenopacket Tools☆15Updated 3 weeks ago
- A repository for version control of consortium data model(s)☆14Updated 2 weeks ago
- Run shell commands in a scientifically reproducible and robust way☆17Updated 6 months ago
- A repository for the schemas used for the Data Repository Service.☆63Updated last month
- Python utilities for CWL☆40Updated last week
- A job submitter for Portable Encapsulated Projects☆22Updated 6 months ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated 2 weeks ago
- Convert CWL to WDL☆17Updated 8 years ago
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆34Updated 3 years ago
- A Github action for running a Snakemake workflow☆59Updated 3 months ago
- GA4GH Variation Representation Python Implementation☆60Updated 3 weeks ago
- Snakemake skeleton - Build workflows with Snakemake☆19Updated last year
- ☆10Updated 3 weeks ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆17Updated last year