mghandi / gkmSVMLinks
gkmSVM R package
☆17Updated 7 years ago
Alternatives and similar repositories for gkmSVM
Users that are interested in gkmSVM are comparing it to the libraries listed below
Sorting:
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- ☆29Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- R package wrapping bedtools☆42Updated 5 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆30Updated 5 months ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- ☆19Updated 3 months ago
- Explore the cancer relevance of your gene list☆51Updated 6 months ago
- ☆16Updated 8 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 3 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- An R for fast and flexible DNA methylation analysis☆33Updated last month
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆11Updated 5 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Tools for visualizing genomics data☆69Updated 3 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆20Updated 4 years ago
- HOT regions paper☆11Updated 6 years ago