mghandi / gkmSVM
gkmSVM R package
☆17Updated 7 years ago
Alternatives and similar repositories for gkmSVM:
Users that are interested in gkmSVM are comparing it to the libraries listed below
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- ☆26Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last week
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- JAMM Peak Finder for Sequencing Datasets☆28Updated 5 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Analysis for svaseq paper☆19Updated 10 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Create QC and summary reports for Alevin output☆32Updated 3 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- ☆26Updated 11 months ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 2 months ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆28Updated 6 years ago
- Code for EpiMap data browser☆14Updated 9 months ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 11 months ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆28Updated 7 years ago
- ☆21Updated last month
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 9 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- interactive plots for differential expression analysis☆32Updated 3 weeks ago