mghandi / gkmSVM
gkmSVM R package
☆17Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for gkmSVM
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- ☆28Updated 4 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- ☆24Updated 7 months ago
- JAMM Peak Finder for Sequencing Datasets☆28Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆27Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆32Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated this week
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- chia pet analysis software☆25Updated 5 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 7 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆25Updated 3 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆34Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆27Updated 9 years ago
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- Chromatin segmentation in R☆19Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Code for EpiMap data browser☆14Updated 5 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆16Updated last year
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆42Updated last year