rafalab / bumphunterLinks
bumphunter
☆18Updated last year
Alternatives and similar repositories for bumphunter
Users that are interested in bumphunter are comparing it to the libraries listed below
Sorting:
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated last year
- Glimma R package☆50Updated last year
- Bioconductor package for management of multi-assay data☆74Updated 3 weeks ago
- Devel repository for minfi☆64Updated last year
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 3 weeks ago
- Explore design matrices interactively with R/Shiny☆38Updated last month
- An introduction to matrix factorization and PCA and SVD.☆41Updated 2 years ago
- Course material for introductory R / Bioconductor courses☆44Updated 2 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated last month
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last month
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 2 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Functional enrichment analysis of high-throughput omics data☆20Updated 11 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 3 years ago
- Reactome Pathway Analysis☆43Updated last week
- DESeq2 or edgeR☆22Updated 9 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- Demonstration of the use of an R package to organize a data analysis project☆22Updated 5 years ago
- An R package for multivariate adaptive shrinkage.☆91Updated last year
- Sample code for ldsc analyses in UKBB☆32Updated 2 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 2 months ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 8 years ago
- Clone of the Bioconductor repository for the basilisk package.☆29Updated last month
- Independent Hypothesis Weighting☆15Updated 2 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆45Updated last year
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- R pkg for Hierarchical Dirichlet Process☆80Updated 2 years ago