A toolset to analyze genomic footprinting data
☆20Jul 4, 2026Updated this week
Alternatives and similar repositories for footprint-tools
Users that are interested in footprint-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- ☆12Mar 18, 2026Updated 3 months ago
- gkmSVM R package☆17Jan 15, 2018Updated 8 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆29Dec 22, 2022Updated 3 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Processing and plotting tools for genomics data☆22Jun 29, 2026Updated last week
- ☆16Jun 3, 2025Updated last year
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 8 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Nov 26, 2025Updated 7 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆48Mar 26, 2025Updated last year
- Clustering motif models to remove redundancy☆47Apr 12, 2023Updated 3 years ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆14Jun 21, 2022Updated 4 years ago
- <<------ Use SnapATAC!!☆26Mar 15, 2019Updated 7 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago
- ☆19Jun 16, 2023Updated 3 years ago
- Assembles a graph manifold from time series single-cell RNAseq data☆18May 11, 2021Updated 5 years ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆14Oct 24, 2019Updated 6 years ago
- Repository with NGSchool2022 materials☆14Sep 19, 2022Updated 3 years ago
- scGRO-seq analyses codes☆13Jan 9, 2024Updated 2 years ago
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated last year
- scover☆23Nov 3, 2023Updated 2 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆42Jun 30, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MGI sequence platform data multiplexing tool☆12Sep 11, 2019Updated 6 years ago
- Differential ATAC-seq toolkit☆29Dec 21, 2023Updated 2 years ago
- Drug Response Estimation from single-cell Expression Profiles☆13Jan 5, 2024Updated 2 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆21Jun 11, 2026Updated 3 weeks ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 5 months ago
- GeneExt - Gene extension for improved scRNA-seq data counting☆18Mar 25, 2026Updated 3 months ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆14May 13, 2019Updated 7 years ago
- ATAC-seq lab for BIOINF545☆24Feb 17, 2026Updated 4 months ago
- A git prompt for bash☆16Feb 19, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆17Jan 3, 2019Updated 7 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- R/Shiny package for network-integrated pathway enrichment analysis☆14Dec 2, 2020Updated 5 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆67Dec 6, 2018Updated 7 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆250Jun 9, 2026Updated last month
- A few exercises from Zed Shaw’s “Learn C the Hard Way”☆21Dec 16, 2019Updated 6 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago