Alternatives and similar repositories for rtracklayer

Users that are interested in rtracklayer are comparing it to the libraries listed below

• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆36Updated 4 months ago
• datapplab / SBGNview
  ☆28Updated 2 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated 3 weeks ago
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆30Updated 11 months ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated 2 months ago
• Bioconductor / Rsamtools
  Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
  ☆28Updated last month
• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆27Updated last month
• carpentries-incubator / bioc-rnaseq
  Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
  ☆26Updated last week
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆21Updated last year
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆22Updated 2 months ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 6 months ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆31Updated last year
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆35Updated last month
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆35Updated 2 weeks ago
• jtleek / sva-devel
  ☆29Updated last year
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆46Updated 2 weeks ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated last week
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆40Updated last month
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• drisso / RUVSeq
  Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…
  ☆14Updated 3 years ago
• genemine / iread
  iread
  ☆25Updated 4 years ago
• Bioconductor / AnnotationHub
  Client for the Bioconductor AnnotationHub web resource
  ☆20Updated last month
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆44Updated 9 months ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last week
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆23Updated 2 months ago
• BIMSBbioinfo / pigx_rnaseq
  Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
  ☆20Updated 11 months ago
• dzhang32 / dasper
  Detecting Aberrant Splicing Events from RNA-sequencing data
  ☆16Updated last year
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆38Updated 2 years ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆31Updated 3 weeks ago