lawremi / rtracklayer
R interface to genome annotation files and the UCSC genome browser
☆31Updated 2 weeks ago
Alternatives and similar repositories for rtracklayer:
Users that are interested in rtracklayer are comparing it to the libraries listed below
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated last year
- Differential expression and allelic analysis, nonparametric statistics☆28Updated 2 months ago
- Trans-association between HLA and TCR-CDR3☆17Updated last year
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆21Updated last month
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last week
- Code for EpiMap data browser☆14Updated 9 months ago
- This is the ensembldb development repository.☆35Updated 7 months ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 4 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 3 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- Create QC and summary reports for Alevin output☆32Updated 3 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated 2 months ago
- anor: an annotation and visualization system based on R and Shiny framework☆33Updated 4 years ago
- R package for Flexible dot plots☆29Updated 2 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 2 weeks ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated 2 weeks ago
- scRNA-Seq analysis vignettes☆9Updated 3 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated 2 weeks ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated last month
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Client for the Bioconductor AnnotationHub web resource☆17Updated 4 months ago
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆13Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- Template for building a bioconductor workshop package using github actions☆20Updated 8 months ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago