cognoma / cancer-dataLinks
TCGA data acquisition and processing for Project Cognoma
☆20Updated 7 years ago
Alternatives and similar repositories for cancer-data
Users that are interested in cancer-data are comparing it to the libraries listed below
Sorting:
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆44Updated 7 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆32Updated 6 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 3 weeks ago
- Code to run OncoSig Analyses☆18Updated 4 years ago
- Modelling DNA methylation profiles☆23Updated 4 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆26Updated last year
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆45Updated last year
- ☆22Updated 5 years ago
- Immunology Informatics - Big Data Analysis in Immunology - Tutorials☆22Updated 7 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- From IDAT to beta.☆25Updated 6 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 6 years ago
- Reactome Pathway Analysis☆42Updated last month
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- ☆12Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 4 years ago
- This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…☆22Updated 3 years ago
- ☆40Updated 7 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated 3 weeks ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆22Updated 7 years ago
- MHC class II binding prediction☆14Updated 2 years ago
- a R package to identify neoantigens from NGS data☆19Updated 7 years ago
- R package for normalizing RNA-seq data to make them comparable to microarray data.☆37Updated 2 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated 3 months ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆55Updated 2 years ago