cognoma / cancer-dataLinks
TCGA data acquisition and processing for Project Cognoma
☆22Updated 7 years ago
Alternatives and similar repositories for cancer-data
Users that are interested in cancer-data are comparing it to the libraries listed below
Sorting:
- ☆35Updated 9 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens☆30Updated 2 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Updated 6 years ago
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆47Updated 7 years ago
- Companion repo for ExAC paper, 2015☆33Updated 9 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆66Updated 3 years ago
- 3D hotspot mutation proximity analysis tool☆52Updated 2 years ago
- A light weight shiny based web app to access TCGA data☆15Updated 10 years ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆34Updated 6 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆37Updated 2 years ago
- ☆22Updated 6 years ago
- From IDAT to beta.☆25Updated 7 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- scRNAseq integration with triplet neural networks☆41Updated last week
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 7 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆62Updated 5 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- A framework to infer mutational signatures in cancer over time☆56Updated 6 years ago
- Modelling DNA methylation profiles☆24Updated 5 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 4 years ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆24Updated 8 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 6 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- Fine-mapping pipeline for Open Targets Genetics☆28Updated 3 years ago