cognoma / cancer-dataLinks
TCGA data acquisition and processing for Project Cognoma
☆21Updated 7 years ago
Alternatives and similar repositories for cancer-data
Users that are interested in cancer-data are comparing it to the libraries listed below
Sorting:
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆61Updated 5 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens☆30Updated last year
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Updated 7 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Modelling DNA methylation profiles☆24Updated 5 years ago
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆47Updated 7 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆37Updated 2 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 11 months ago
- ☆35Updated 9 years ago
- 3D hotspot mutation proximity analysis tool☆50Updated 2 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆31Updated 6 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 8 years ago
- Companion repo for ExAC paper, 2015☆33Updated 9 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- ☆22Updated 6 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆66Updated 2 years ago
- ☆42Updated 7 years ago
- A light weight shiny based web app to access TCGA data☆15Updated 10 years ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆34Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated 10 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Updated 6 years ago