HelikarLab / CancerDiscover
Open-source software pipeline for cancer classification from high-throughput data using machine learning.
☆18Updated 6 years ago
Alternatives and similar repositories for CancerDiscover:
Users that are interested in CancerDiscover are comparing it to the libraries listed below
- Immune deconvolution of publicly available TCGA expression data☆11Updated 6 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆28Updated 10 months ago
- DSDE Deep Learning Club☆40Updated 5 years ago
- ☆19Updated 4 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆46Updated 2 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Immunology Informatics - Big Data Analysis in Immunology - Tutorials☆21Updated 7 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Search public databases for given genotypic information☆11Updated 6 years ago
- TCGA data acquisition and processing for Project Cognoma☆20Updated 6 years ago
- Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features☆14Updated 6 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Updated 6 years ago
- Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons☆31Updated 6 years ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆19Updated 3 years ago
- Scripts supporting identification of genomic features affecting survival time in cancer☆12Updated 6 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 5 years ago
- Python utilities for building integrated views of TCGA data.☆31Updated 6 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- ActiveDriverDB☆12Updated last year
- BioPython/scikit-bio tutorial for EuroSciPy 2018☆13Updated 6 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆65Updated 4 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- A python library for creating simulated regulatory DNA sequences☆38Updated last year
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆21Updated 9 months ago
- Deep proteome inference from peptide profiles☆13Updated 4 years ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 2 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Updated 8 years ago
- Source code of the paper "DeepGene: an advanced cancer type classifier based on deep learning and somatic point mutations"☆13Updated 7 years ago
- ☆21Updated this week
- Analytical R Tools for Mass Spectrometry☆14Updated last year