Open-source software pipeline for cancer classification from high-throughput data using machine learning.
☆19Feb 19, 2019Updated 7 years ago
Alternatives and similar repositories for CancerDiscover
Users that are interested in CancerDiscover are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DSDE Deep Learning Club☆40Mar 28, 2019Updated 7 years ago
- Understanding sequence conservation with deep learning☆20Mar 19, 2017Updated 9 years ago
- TCGA data acquisition and processing for Project Cognoma☆23Apr 19, 2018Updated 7 years ago
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 4 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆11Jun 23, 2017Updated 8 years ago
- Building classifiers using cancer transcriptomes across 33 different cancer-types☆123Apr 30, 2019Updated 6 years ago
- Awk, bash, python scripts for processing NGS data☆14Nov 6, 2015Updated 10 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Mar 26, 2026Updated 2 weeks ago
- ☆11Aug 21, 2018Updated 7 years ago
- Software and analysis of metabolism studies across multiple cancer types☆10Sep 5, 2017Updated 8 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- Collection of notes and scripts related to NGS☆14Feb 18, 2026Updated last month
- ☆15Dec 13, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Mar 20, 2024Updated 2 years ago
- CRISPR NGS data analysis and visualization pipeline☆16Jul 26, 2019Updated 6 years ago
- Initial data release for drug-target interactions of the cancer targetome.☆16Jul 8, 2021Updated 4 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 7 years ago
- Torch implementation for MDNet: A Semantically and Visually Interpretable Medical Image Diagnosis Network☆34Dec 25, 2017Updated 8 years ago
- Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.☆23Apr 16, 2018Updated 7 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Feb 13, 2017Updated 9 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- a R package to identify neoantigens from NGS data☆18Jun 29, 2017Updated 8 years ago
- A curated list of useful bioinformatics and computational biology tools, sorted by category.☆56Apr 29, 2015Updated 10 years ago
- Personal Cancer Genome Reporter (PCGR)☆274Apr 1, 2026Updated last week
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆18Aug 3, 2023Updated 2 years ago
- ☆27Jun 5, 2025Updated 10 months ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆22Aug 29, 2022Updated 3 years ago
- ☆35Mar 30, 2026Updated last week
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Jun 9, 2017Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 7 months ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆30Jan 8, 2024Updated 2 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials☆20Dec 5, 2023Updated 2 years ago
- A curated list of mining resources from the web☆15Jul 19, 2018Updated 7 years ago
- A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.☆19Nov 20, 2018Updated 7 years ago
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 11 years ago