☆18Sep 28, 2015Updated 10 years ago
Alternatives and similar repositories for icgc_rnaseq_align
Users that are interested in icgc_rnaseq_align are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆14Nov 12, 2019Updated 6 years ago
- Software and analysis of metabolism studies across multiple cancer types☆11Sep 5, 2017Updated 8 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Jun 9, 2026Updated last month
- TCGA data acquisition and processing for Project Cognoma☆23Apr 19, 2018Updated 8 years ago
- Filters for false-positive mutation calls in NGS☆34Apr 12, 2019Updated 7 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆13Mar 16, 2026Updated 4 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Jan 17, 2020Updated 6 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- Dichotomous of innate immune landscape☆17Aug 31, 2019Updated 6 years ago
- ☆10May 17, 2017Updated 9 years ago
- ☆17Jan 9, 2023Updated 3 years ago
- single cell sequencing analysis tutorial☆18Jan 15, 2020Updated 6 years ago
- R functions underlying ExpressAnalyst☆14Updated this week
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆44Oct 27, 2018Updated 7 years ago
- Survival analysis utility functions using functional programming principals☆11Jul 8, 2020Updated 6 years ago
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Mar 4, 2022Updated 4 years ago
- Python package to annotate and visualize gene fusions.☆67Apr 14, 2026Updated 3 months ago
- ☆12Sep 25, 2024Updated last year
- Library and tool for annotating MAF files using Genome Nexus Webserver API☆14Jun 15, 2026Updated last month
- Convolutional neural network for categorising prostate cancer from MRI images.☆11Jul 22, 2020Updated 6 years ago
- Code to run OncoSig Analyses☆18Sep 30, 2020Updated 5 years ago
- Code Repo for Doctor2vec☆11Jan 23, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Apr 26, 2020Updated 6 years ago
- ☆36Apr 24, 2026Updated 3 months ago
- A comprehensive toolkit for mutational signature analysis☆42Jul 19, 2024Updated 2 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Oct 29, 2021Updated 4 years ago
- DYNamics Agnostic Network MOdels☆18Jul 3, 2018Updated 8 years ago
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- ☆13Sep 24, 2025Updated 10 months ago
- This is the repository for paper titled as "Convolutional neural network models for cancer type prediction based on gene expression".☆12Dec 9, 2020Updated 5 years ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆46Mar 13, 2026Updated 4 months ago
- MaxQuant Automated Pipeline☆24Jun 13, 2020Updated 6 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- Source code of the paper "DeepGene: an advanced cancer type classifier based on deep learning and somatic point mutations"☆13Sep 7, 2017Updated 8 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Mar 7, 2013Updated 13 years ago
- An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study☆105Jul 1, 2022Updated 4 years ago
- ☆11Jun 13, 2024Updated 2 years ago