davidnboone / tcga_brca_rnaseq
jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data
β29Updated 5 years ago
Related projects β
Alternatives and complementary repositories for tcga_brca_rnaseq
- πΊ Exploring novel tumor epitope identificationβ35Updated 4 years ago
- A continually expanding collection of RNA-seq toolsβ46Updated last month
- A single-cell and spatial RNA-seq database for Alzheimerβs Diseaseβ19Updated 4 months ago
- My youtube programming scriptsβ39Updated this week
- From RNA-seq raw reads to enriched pathways by DEGsβ32Updated 6 months ago
- Microbial analysis in TCGA dataβ89Updated 9 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigatorβ48Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSFβ35Updated 6 years ago
- Personal notes about work- and coding-related topicsβ18Updated last year
- β10Updated 2 months ago
- Relative Expression Ordering Analysis (REOA) packageβ20Updated 2 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq dataβ29Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing projectβ41Updated 3 years ago
- ATAC-seq lab for BIOINF545β25Updated 8 months ago
- Time-Course Multi-Omics data integrationβ24Updated 7 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"β53Updated 3 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVALβ55Updated last year
- Clinical interpretation of somatic mutations in cancerβ42Updated 2 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.β56Updated 9 months ago
- Scripts to recreate figures from the SC3 paperβ39Updated 7 years ago
- Workshop β’ Analysis of RNA-seq dataβ34Updated 8 months ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packagesβ42Updated last year
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-seβ¦β14Updated last week
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneouslyβ34Updated last year
- Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.β13Updated 2 months ago
- β46Updated 2 years ago
- β25Updated 3 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manβ¦β51Updated 6 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in pythonβ26Updated 4 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screensβ26Updated 10 months ago