jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data
☆33Mar 1, 2019Updated 7 years ago
Alternatives and similar repositories for tcga_brca_rnaseq
Users that are interested in tcga_brca_rnaseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TCGA data acquisition and processing for Project Cognoma☆23Apr 19, 2018Updated 8 years ago
- ☆36Sep 6, 2017Updated 8 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.☆54Jul 20, 2019Updated 6 years ago
- Deep learning methods for feature selection in gene expression autism data.☆37Jun 21, 2022Updated 3 years ago
- This BLENDER has been sunsetted☆16Sep 27, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R package with Shiny application for DGE analysis☆12Jan 8, 2024Updated 2 years ago
- Welcome to Colab_NAMD_suit, your gateway to running MD simulations!☆17Jun 25, 2024Updated last year
- 3’ Tag RNA-seq pipeline (Work in progress)☆10Mar 14, 2021Updated 5 years ago
- Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode☆36May 18, 2020Updated 5 years ago
- Somatic workflow for Kids-First☆15Updated this week
- DEAPP shiny App☆30Jun 8, 2022Updated 3 years ago
- ☆11Aug 21, 2018Updated 7 years ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Jan 24, 2022Updated 4 years ago
- ☆21Feb 20, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆36Feb 1, 2022Updated 4 years ago
- ☆21Oct 2, 2024Updated last year
- A tiny package manager for crucial unix and bioinformatics tools☆27Apr 30, 2015Updated 10 years ago
- ☆35Feb 11, 2026Updated 2 months ago
- A shiny-based web tool for interactive analysis of DepMap data☆24Feb 13, 2021Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Multi-nucleotide Variation Annotation Corrector☆11Dec 13, 2022Updated 3 years ago
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic data☆11Nov 7, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Graph Neural Network model for survival analysis from multi-omics data☆14Mar 9, 2022Updated 4 years ago
- Cytoscape interface to STRING and STITCH☆11May 9, 2025Updated 11 months ago
- ☆28Apr 5, 2025Updated last year
- An R package for working with phenotypic screening data☆10Nov 22, 2018Updated 7 years ago
- Chemometric analysis methods implemented in python☆14Jul 13, 2025Updated 9 months ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- Source code and data files for "PEMT: A patent enrichment tool with applicability in drug discovery"☆16Jan 27, 2025Updated last year
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆15Feb 5, 2026Updated 2 months ago
- ☆12Aug 20, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A web based application predicts water solubility of any given chemical compound known or unknown☆14Jul 4, 2021Updated 4 years ago
- ☆12Jan 29, 2025Updated last year
- 命例☆10Sep 27, 2018Updated 7 years ago
- The present study is finalised to determine the most advanced models in the literature capable of producing new high-quality molecules st…☆10Aug 31, 2021Updated 4 years ago
- R package for analysis of single-cell data using graphs☆11Jun 8, 2023Updated 2 years ago
- Differential gene expression analysis on RNA-seq data☆13Apr 26, 2024Updated last year
- Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians while handling biological data e…☆44Jun 1, 2024Updated last year