davidnboone / tcga_brca_rnaseqLinks
jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data
β33Updated 6 years ago
Alternatives and similar repositories for tcga_brca_rnaseq
Users that are interested in tcga_brca_rnaseq are comparing it to the libraries listed below
Sorting:
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkitβ49Updated 2 years ago
- πΊ Exploring novel tumor epitope identificationβ36Updated 5 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipelineβ33Updated 7 months ago
- Building classifiers using cancer transcriptomes across 33 different cancer-typesβ120Updated 6 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) dataβ48Updated last year
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )β36Updated 3 years ago
- A single-cell and spatial RNA-seq database for Alzheimerβs Diseaseβ26Updated last year
- GREIN : GEO RNA-seq Experiments Interactive Navigatorβ50Updated 6 years ago
- β83Updated 10 months ago
- bioinformatics plotting and toolsβ59Updated last year
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"β45Updated 2 years ago
- BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysisβ50Updated 4 months ago
- Microarray Analysis Pipeline in Pythonβ19Updated 6 years ago
- Deep neural networks for predicting CpG methylationβ37Updated 8 years ago
- Single-cell exploratory data analysis for RNA-Seqβ40Updated 4 years ago
- TCGA data acquisition and processing for Project Cognomaβ21Updated 7 years ago
- A repository for sharing information on available COVID-19 RNA-Seq datasetsβ81Updated 3 years ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysisβ46Updated 5 years ago
- Generative adversarial networks for single-cell RNA-seq imputationβ39Updated 5 years ago
- Tutorials for multimodal omics data analysisβ17Updated 7 months ago
- Python API for Xena Hubβ53Updated 2 years ago
- A continually expanding collection of RNA-seq toolsβ52Updated 2 weeks ago
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omicβ¦β41Updated 6 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneouslyβ37Updated 2 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputationβ89Updated 3 years ago
- Comprehensive survival analyses on the TCGA data.β18Updated 3 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.β65Updated 4 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccinesβ86Updated last month
- scRNAseq integration with triplet neural networksβ41Updated 2 years ago
- Relative Expression Ordering Analysis (REOA) packageβ21Updated 2 years ago