davidnboone / tcga_brca_rnaseqLinks
jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data
β33Updated 6 years ago
Alternatives and similar repositories for tcga_brca_rnaseq
Users that are interested in tcga_brca_rnaseq are comparing it to the libraries listed below
Sorting:
- πΊ Exploring novel tumor epitope identificationβ37Updated 5 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkitβ50Updated 2 years ago
- Python API for Xena Hubβ55Updated 2 years ago
- Building classifiers using cancer transcriptomes across 33 different cancer-typesβ122Updated 6 years ago
- β86Updated last year
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omicβ¦β41Updated 6 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) dataβ49Updated 2 years ago
- Deep neural networks for predicting CpG methylationβ37Updated 8 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"β46Updated 2 years ago
- TCGA data acquisition and processing for Project Cognomaβ22Updated 7 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.β84Updated 4 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneouslyβ37Updated 2 years ago
- Physalia course Machine Learning for Multi-Omics Integrationβ17Updated 7 months ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputationβ89Updated 3 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipelineβ34Updated 9 months ago
- A continually expanding collection of RNA-seq toolsβ53Updated 3 months ago
- A repository for sharing information on available COVID-19 RNA-Seq datasetsβ81Updated 3 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigatorβ50Updated 6 years ago
- Clinical interpretation of somatic mutations in cancerβ50Updated 10 months ago
- BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysisβ50Updated 7 months ago
- bioinformatics plotting and toolsβ59Updated last year
- A single-cell and spatial RNA-seq database for Alzheimerβs Diseaseβ26Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq dataβ30Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embeddedβ25Updated 3 years ago
- Immunology-related bioinformatics data and toolsβ76Updated last year
- β18Updated 3 years ago
- Data and analysis for the Splatter paperβ29Updated 8 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for β¦β58Updated 7 months ago
- Tutorials for multimodal omics data analysisβ19Updated 10 months ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.β38Updated 6 years ago