Pipelines for NGS data preprocessing by the Bock lab and friends
☆21Aug 29, 2022Updated 3 years ago
Alternatives and similar repositories for open_pipelines
Users that are interested in open_pipelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆18Aug 3, 2023Updated 3 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆17Feb 6, 2026Updated 6 months ago
- PredictDB Pipeline for GTEx v7 data☆18Nov 9, 2022Updated 3 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- AIDA phase 1 splicing QTL paper☆16Feb 17, 2026Updated 5 months ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 10 years ago
- a set of NGS pipelines☆24Jun 30, 2026Updated last month
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- ☆19May 15, 2025Updated last year
- ☆21May 6, 2025Updated last year
- Collection of notes and scripts related to NGS☆14Feb 18, 2026Updated 5 months ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Dec 7, 2020Updated 5 years ago
- ☆19Oct 31, 2025Updated 9 months ago
- Pipelines for NGS, imputation, gwas, ...☆30Dec 18, 2019Updated 6 years ago
- ☆15Feb 12, 2026Updated 5 months ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 5 months ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 11 months ago
- single cell and bulk RNASeq analysis scripts☆13Jan 13, 2022Updated 4 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- Subtyping tool for multi-omic data☆14Jul 6, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- Python library to visualize circular plasmid maps☆27Dec 12, 2021Updated 4 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- ☆12Apr 25, 2026Updated 3 months ago
- workshop website on readthedocs☆23Jun 1, 2026Updated 2 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆29Updated this week
- ☆18Dec 15, 2021Updated 4 years ago
- Data science in R notes☆15Apr 28, 2025Updated last year
- trackc aims to produce beautiful genome tracks that are highly customizable☆19Jun 6, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆21Oct 10, 2020Updated 5 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Sep 29, 2017Updated 8 years ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Nov 29, 2022Updated 3 years ago
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆13Sep 3, 2024Updated last year
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- Documents used for workshops on single cell analysis☆27Feb 5, 2017Updated 9 years ago
- An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps☆21Apr 3, 2018Updated 8 years ago