epigen / open_pipelinesLinks
Pipelines for NGS data preprocessing by the Bock lab and friends
☆21Updated 3 years ago
Alternatives and similar repositories for open_pipelines
Users that are interested in open_pipelines are comparing it to the libraries listed below
Sorting:
- a set of NGS pipelines☆24Updated this week
- ☆23Updated 4 years ago
- Readme☆10Updated 5 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- RNA-seq analysis scripts☆15Updated 2 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Long read to rMATS☆32Updated 2 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆22Updated 2 years ago
- simplified cellranger for long-read data☆19Updated 3 weeks ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 9 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated 2 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- ☆32Updated 9 months ago
- ☆23Updated 6 months ago
- Transcriptome-wide network☆16Updated 6 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Documentation for vcfR☆11Updated 4 months ago
- Define regions in the genome☆32Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- A curated list of bioinformatics bench-marking papers and resources.☆15Updated 5 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- ☆20Updated 5 years ago
- Micro DNA identification☆24Updated 4 years ago