Pipelines for NGS data preprocessing by the Bock lab and friends
☆22Aug 29, 2022Updated 4 years ago
Alternatives and similar repositories for open_pipelines
Users that are interested in open_pipelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆18Aug 3, 2023Updated 3 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆18Feb 6, 2026Updated 7 months ago
- PredictDB Pipeline for GTEx v7 data☆18Nov 9, 2022Updated 3 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- AIDA phase 1 splicing QTL paper☆16Feb 17, 2026Updated 7 months ago
- a set of NGS pipelines☆25Updated this week
- ☆19May 15, 2025Updated last year
- ☆21May 6, 2025Updated last year
- Collection of notes and scripts related to NGS☆14Sep 2, 2026Updated 2 weeks ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- ☆13Dec 7, 2020Updated 5 years ago
- ☆20Oct 31, 2025Updated 10 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Pipelines for NGS, imputation, gwas, ...☆30Dec 18, 2019Updated 6 years ago
- ☆17Feb 12, 2026Updated 7 months ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated last year
- Bedfile perturbation tool☆17Mar 6, 2026Updated 6 months ago
- single cell and bulk RNASeq analysis scripts☆13Jan 13, 2022Updated 4 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆15Dec 3, 2018Updated 7 years ago
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- Python library to visualize circular plasmid maps☆27Dec 12, 2021Updated 4 years ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- ☆12Apr 25, 2026Updated 4 months ago
- workshop website on readthedocs☆24Jun 1, 2026Updated 3 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆29Aug 20, 2026Updated 3 weeks ago
- ☆18Dec 15, 2021Updated 4 years ago
- Data science in R notes☆15Apr 28, 2025Updated last year
- trackc aims to produce beautiful genome tracks that are highly customizable☆19Jun 6, 2026Updated 3 months ago
- ☆20Oct 10, 2020Updated 5 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Sep 29, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Nov 29, 2022Updated 3 years ago
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆13Sep 3, 2024Updated 2 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 6 years ago
- Documents used for workshops on single cell analysis☆27Feb 5, 2017Updated 9 years ago
- An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps☆21Apr 3, 2018Updated 8 years ago
- Modular Genome Assembly, Annotation and Assessment Pipeline☆23Mar 16, 2026Updated 6 months ago
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…☆11Sep 5, 2020Updated 6 years ago