Pipelines for NGS data preprocessing by the Bock lab and friends
☆22Aug 29, 2022Updated 3 years ago
Alternatives and similar repositories for open_pipelines
Users that are interested in open_pipelines are comparing it to the libraries listed below
Sorting:
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆18Aug 3, 2023Updated 2 years ago
- PredictDB Pipeline for GTEx v7 data☆18Nov 9, 2022Updated 3 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 10 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- a set of NGS pipelines☆24Mar 10, 2026Updated last week
- ☆13Feb 12, 2026Updated last month
- ☆18May 15, 2025Updated 10 months ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆15Feb 6, 2026Updated last month
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- Collection of notes and scripts related to NGS☆14Feb 18, 2026Updated last month
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- ☆12Dec 7, 2020Updated 5 years ago
- ☆17Oct 31, 2025Updated 4 months ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- ☆18Oct 23, 2025Updated 4 months ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 2 weeks ago
- inference of transcription factor activity at the single cell level☆24Dec 16, 2025Updated 3 months ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- ☆11May 10, 2025Updated 10 months ago
- Python library to visualize circular plasmid maps☆27Dec 12, 2021Updated 4 years ago
- RNA-seq analysis scripts☆16Jan 8, 2026Updated 2 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Nov 20, 2025Updated 4 months ago
- ☆18Dec 15, 2021Updated 4 years ago
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- Subtyping tool for multi-omic data☆13Jul 6, 2022Updated 3 years ago
- ☆20Oct 10, 2020Updated 5 years ago
- workshop website on readthedocs☆21Sep 26, 2025Updated 5 months ago
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆12Sep 3, 2024Updated last year
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 7 months ago
- Data science in R notes☆15Apr 28, 2025Updated 10 months ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Sep 29, 2017Updated 8 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- Documents used for workshops on single cell analysis☆27Feb 5, 2017Updated 9 years ago
- An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps☆21Apr 3, 2018Updated 7 years ago
- scripts for analyzing the CVDC data.☆20Dec 5, 2019Updated 6 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago