epigen / open_pipelinesLinks
Pipelines for NGS data preprocessing by the Bock lab and friends
☆22Updated 3 years ago
Alternatives and similar repositories for open_pipelines
Users that are interested in open_pipelines are comparing it to the libraries listed below
Sorting:
- a set of NGS pipelines☆24Updated 3 weeks ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ☆23Updated 4 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- Readme☆10Updated 5 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- RNA-seq analysis scripts☆15Updated last month
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Define regions in the genome☆33Updated 3 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated last week
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- ☆34Updated last month
- Workflow for Sequenza, cellularity and ploidy☆25Updated 4 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago