zhiyhu / NMD-paperLinks
A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay
☆15Updated 5 years ago
Alternatives and similar repositories for NMD-paper
Users that are interested in NMD-paper are comparing it to the libraries listed below
Sorting:
- LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network☆13Updated 3 years ago
- ☆44Updated 7 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Updated 6 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Utility functions for FACETS☆39Updated 3 weeks ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- ☆41Updated 7 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated last week
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15Updated 10 years ago
- MicrOSAtellite Instability Classifier☆15Updated 7 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- ☆13Updated 8 years ago
- Single Cell Analysis Automated Workflow☆28Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Data/analysis repository for "Interrogation of human hematopoiesis..." paper☆20Updated 6 years ago
- ☆10Updated 7 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago