zeochoy / tcga-embeddingLinks
using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data
☆21Updated 6 years ago
Alternatives and similar repositories for tcga-embedding
Users that are interested in tcga-embedding are comparing it to the libraries listed below
Sorting:
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆30Updated last year
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆32Updated 6 years ago
- Cancer Drug Response prediction using a Recommender System☆42Updated last year
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Updated 4 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 4 years ago
- ☆19Updated 4 years ago
- ☆19Updated 4 years ago
- Generative adversarial networks for single-cell RNA-seq imputation☆39Updated 4 years ago
- Python Implementation of SIMLR for single-cell visualization and analysis☆23Updated 2 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 3 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆52Updated 6 years ago
- ☆66Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Updated 4 years ago
- Prediction of mRNA subcellular localization using deep recurrent neural networks☆15Updated 5 years ago
- MVP (Qi et al 2021) source code☆16Updated 4 years ago
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…☆16Updated 5 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆64Updated 4 years ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 4 years ago
- ☆33Updated 2 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 2 years ago
- ☆10Updated 5 years ago
- repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks☆16Updated 3 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- covolutional neural network based coexpression analysis☆78Updated 5 years ago