hallamlab / mp_tutorialLinks
A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.
☆18Updated 10 years ago
Alternatives and similar repositories for mp_tutorial
Users that are interested in mp_tutorial are comparing it to the libraries listed below
Sorting:
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆12Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- The Zika bioinformatics pipeline☆35Updated 5 years ago
- Public Health England SNP calling pipeline.☆37Updated 7 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆71Updated last year
- Perform microbiome-wide association studies with a variety of models☆18Updated 8 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated last year
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm☆18Updated 11 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated last week
- Workshop materials for shotgun metagenomics☆36Updated 8 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- Highly sensitive pathogen detection☆11Updated 4 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Interactive tools for metagenome visualization and binning in R☆27Updated 7 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 11 years ago
- Pipelines to do MinION sequencing of Zika virus☆16Updated 6 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…☆20Updated 6 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆24Updated last year
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 3 years ago