hallamlab / mp_tutorial
A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.
☆19Updated 10 years ago
Alternatives and similar repositories for mp_tutorial:
Users that are interested in mp_tutorial are comparing it to the libraries listed below
- Perform microbiome-wide association studies with a variety of models☆16Updated 8 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 5 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 8 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- MicrobeDirectory 2.0☆22Updated 4 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 11 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- A Teaching Engine for Genomics☆12Updated 4 years ago
- Annotate your metagenome assemblies☆11Updated 6 years ago
- An interactive and explorative visualization tool in D3 based on hive plots built for complex networks.☆9Updated 4 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆13Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Interactive Visual Analysis of differential gene expression test results☆22Updated 8 years ago
- Talk to the NCBI EUtils☆22Updated 4 years ago
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆20Updated 11 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 4 years ago
- Whole genome core alignments from multiple draft genomes☆12Updated 8 years ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18Updated last year
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- Modular snakemake workflow for assembly-based metagenomics☆10Updated 7 years ago