isb-cgc / examples-PythonLinks
Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
☆54Updated 6 years ago
Alternatives and similar repositories for examples-Python
Users that are interested in examples-Python are comparing it to the libraries listed below
Sorting:
- Examples for the Google Genomics Pipelines API.☆50Updated 7 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 7 years ago
- ☆36Updated 8 years ago
- In-progress projects at Harvard School of Public Health Bioinformatics Core☆41Updated 7 years ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆27Updated 6 years ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 3 years ago
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 3 months ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 8 years ago
- SevenBridges Python Api bindings☆46Updated 9 months ago
- [DEPRECATED] An R package for Google Genomics API queries.☆45Updated 2 years ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Updated 10 years ago
- TCGA data acquisition and processing for Project Cognoma☆21Updated 7 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Updated 8 months ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆71Updated last month
- ☆35Updated 9 years ago
- A needle plot for mutation data☆27Updated 8 years ago
- MyVariant.info: A BioThings API for human variant annotations☆96Updated 2 months ago
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆39Updated 5 years ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- A scalable genome browser. Apache 2 licensed.☆126Updated 2 years ago
- http://bam.iobio.io☆47Updated last year
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- Efficient handling of FASTQ files from Python☆51Updated 3 months ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆71Updated 2 years ago
- Browser for ExAC consortium data☆106Updated 3 years ago