Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
☆54Jul 20, 2019Updated 6 years ago
Alternatives and similar repositories for examples-Python
Users that are interested in examples-Python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆36Sep 6, 2017Updated 8 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Nov 27, 2017Updated 8 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆33Mar 1, 2019Updated 7 years ago
- miscellaneous script-like stuff in go for bioinformatics☆14Nov 4, 2016Updated 9 years ago
- TCGA data acquisition and processing for Project Cognoma☆23Apr 19, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆12Feb 19, 2017Updated 9 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Python utilities for building integrated views of TCGA data.☆32Mar 25, 2018Updated 8 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Nov 16, 2018Updated 7 years ago
- Javascript library for visualizing OncoGrids and related tracks☆26Aug 14, 2020Updated 5 years ago
- Parametric sweep of simulated microbial communities and metagenomic sequencing.☆11Jul 15, 2022Updated 3 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MetaPORE – Chiu Laboratory, University of California, San Francisco☆12Nov 4, 2015Updated 10 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Jul 1, 2024Updated last year
- A Binder-compatibible repo with a Dockerfile☆11Aug 18, 2017Updated 8 years ago
- Performs BLAST on compressed proteomic data.☆17Jun 15, 2015Updated 10 years ago
- Documentation for the ISB-CGC on Read the Docs.☆11Jan 20, 2026Updated 2 months ago
- Official repository for GDC User Guides in Markdown format☆62Mar 27, 2026Updated 2 weeks ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆30Nov 25, 2020Updated 5 years ago
- Gossamer bioinformatics suite☆23Dec 4, 2024Updated last year
- Example Cloud Datalab iPython Notebooks for genomics use cases.☆25Sep 5, 2017Updated 8 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 9 months ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago
- cyclone☆19Jul 21, 2015Updated 10 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- Multi-nucleotide Variation Annotation Corrector☆11Dec 13, 2022Updated 3 years ago
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic data☆11Nov 7, 2024Updated last year
- Documentation for NCBI BLAST AMI☆11Feb 28, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Higher level repo for aggregating all of Atlas workflow logic for Single Cell☆14Mar 31, 2026Updated last week
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 9 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Oct 18, 2024Updated last year
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 9 years ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Jul 29, 2020Updated 5 years ago
- geard is no longer maintained - see OpenShift 3 and Kubernetes☆403Dec 16, 2015Updated 10 years ago