Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
☆54Jul 20, 2019Updated 6 years ago
Alternatives and similar repositories for examples-Python
Users that are interested in examples-Python are comparing it to the libraries listed below
Sorting:
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Nov 27, 2017Updated 8 years ago
- ☆36Sep 6, 2017Updated 8 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- miscellaneous script-like stuff in go for bioinformatics☆14Nov 4, 2016Updated 9 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 2 years ago
- Performs BLAST on compressed proteomic data.☆17Jun 15, 2015Updated 10 years ago
- TCGA data acquisition and processing for Project Cognoma☆22Apr 19, 2018Updated 7 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Nov 16, 2018Updated 7 years ago
- MetaPORE – Chiu Laboratory, University of California, San Francisco☆12Nov 4, 2015Updated 10 years ago
- Parametric sweep of simulated microbial communities and metagenomic sequencing.☆11Jul 15, 2022Updated 3 years ago
- ☆15Aug 13, 2023Updated 2 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 9 years ago
- A Binder-compatibible repo with a Dockerfile☆11Aug 18, 2017Updated 8 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated 6 months ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆33Mar 1, 2019Updated 6 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆30Nov 25, 2020Updated 5 years ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Jul 29, 2020Updated 5 years ago
- web based visualisation of molecular interaction data☆12May 22, 2025Updated 9 months ago
- Universal RObust Peak Annotator☆16Dec 19, 2023Updated 2 years ago
- Fostering open source collaboration with technical writers.☆10Aug 17, 2019Updated 6 years ago
- The public repository for the Proteomic Data Commons UI and APIs☆17Feb 19, 2026Updated last week
- GPU accelerated GWAS framework based on TensorFlow☆33Jul 6, 2023Updated 2 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Dec 18, 2021Updated 4 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Feb 11, 2022Updated 4 years ago
- ☆13Jan 20, 2016Updated 10 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Jul 1, 2024Updated last year
- R package for extracting mutation signatures from a list of somatic mutations☆37Aug 9, 2019Updated 6 years ago
- The R programmatic interface to Synapse services☆27Oct 4, 2018Updated 7 years ago
- A deep learning package for predicting TF binding☆42Jan 23, 2020Updated 6 years ago
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- A program fror inter-protein contact prediction from structures of interacting proteins☆20Jun 1, 2024Updated last year
- A script that computationally designs a vaccine☆18Jan 9, 2022Updated 4 years ago
- DeepWAS: Directly integrating regulatory information into GWAS using machine learning☆17Mar 14, 2019Updated 6 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Oct 18, 2024Updated last year
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Sep 17, 2021Updated 4 years ago
- JavaScript-based pathway viewer and editor☆35Feb 20, 2025Updated last year
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 6 months ago