Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
☆54Jul 20, 2019Updated 7 years ago
Alternatives and similar repositories for examples-Python
Users that are interested in examples-Python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆35Sep 6, 2017Updated 8 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Nov 27, 2017Updated 8 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆33Mar 1, 2019Updated 7 years ago
- miscellaneous script-like stuff in go for bioinformatics☆14Nov 4, 2016Updated 9 years ago
- TCGA data acquisition and processing for Project Cognoma☆23Apr 19, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Feb 19, 2017Updated 9 years ago
- Python utilities for building integrated views of TCGA data.☆32Mar 25, 2018Updated 8 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Nov 16, 2018Updated 7 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated 11 months ago
- MetaPORE – Chiu Laboratory, University of California, San Francisco☆12Nov 4, 2015Updated 10 years ago
- ☆23Dec 4, 2025Updated 7 months ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Jul 1, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Official repository for GDC User Guides in Markdown format☆68Jun 18, 2026Updated last month
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- A script that computationally designs a vaccine☆18Jan 9, 2022Updated 4 years ago
- Performs BLAST on compressed proteomic data.☆18Jun 15, 2015Updated 11 years ago
- Official repository for GDC User Guides in Markdown format☆62Updated this week
- IHC-image analysis workflow☆24May 29, 2018Updated 8 years ago
- The present study is finalised to determine the most advanced models in the literature capable of producing new high-quality molecules st…☆10Aug 31, 2021Updated 4 years ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 10 months ago
- Genetic changes we can believe in: a web based tool for variant visualization and analysis☆18Apr 17, 2013Updated 13 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- JavaScript-based pathway viewer and editor☆38Feb 20, 2025Updated last year
- Example Cloud Datalab iPython Notebooks for genomics use cases.☆25Sep 5, 2017Updated 8 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆30Nov 25, 2020Updated 5 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 10 years ago
- cyclone☆19Jul 21, 2015Updated 11 years ago
- python access to UCSC genomes database☆138Aug 27, 2020Updated 5 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- Using data to dig into the 2015 NL Cy Young race☆10Nov 19, 2015Updated 10 years ago
- Repository for the code associated with the paper Impact of applicability domains by Maxime Langevin et al.☆13Feb 19, 2025Updated last year
- ☆14Jun 15, 2026Updated last month
- ☆24Aug 9, 2017Updated 8 years ago