Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
☆54Jul 20, 2019Updated 6 years ago
Alternatives and similar repositories for examples-Python
Users that are interested in examples-Python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆36Sep 6, 2017Updated 8 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Nov 27, 2017Updated 8 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆33Mar 1, 2019Updated 7 years ago
- miscellaneous script-like stuff in go for bioinformatics☆14Nov 4, 2016Updated 9 years ago
- A simple cross-platform dialogue graph editor.☆19Oct 24, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- TCGA data acquisition and processing for Project Cognoma☆23Apr 19, 2018Updated 8 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Python utilities for building integrated views of TCGA data.☆32Mar 25, 2018Updated 8 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Nov 16, 2018Updated 7 years ago
- Parametric sweep of simulated microbial communities and metagenomic sequencing.☆11Jul 15, 2022Updated 3 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated 8 months ago
- MetaPORE – Chiu Laboratory, University of California, San Francisco☆12Nov 4, 2015Updated 10 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Jul 1, 2024Updated last year
- Official repository for GDC User Guides in Markdown format☆68Aug 15, 2024Updated last year
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- Performs BLAST on compressed proteomic data.☆17Jun 15, 2015Updated 10 years ago
- The R programmatic interface to Synapse services☆27Oct 4, 2018Updated 7 years ago
- Official repository for GDC User Guides in Markdown format☆62Updated this week
- Processing of single cell RNAseq data for the recovery of TCRs in python☆30Nov 25, 2020Updated 5 years ago
- Gossamer bioinformatics suite☆23Dec 4, 2024Updated last year
- IHC-image analysis workflow☆24May 29, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 10 months ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago
- cyclone☆19Jul 21, 2015Updated 10 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- Multi-nucleotide Variation Annotation Corrector☆11Dec 13, 2022Updated 3 years ago
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic data☆11Nov 7, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Apr 14, 2026Updated 2 weeks ago
- Documentation for NCBI BLAST AMI☆11Feb 28, 2022Updated 4 years ago
- ☆24Aug 9, 2017Updated 8 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 10 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆248Oct 18, 2024Updated last year
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 9 years ago