Alternatives and similar repositories for beacon-elixir

Users that are interested in beacon-elixir are comparing it to the libraries listed below

• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆85Updated 2 weeks ago
• bow / crimson
  Bioinformatics tool outputs converter to JSON or YAML
  ☆35Updated 7 months ago
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆99Updated 7 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆61Updated last week
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆71Updated 3 months ago
• moonso / vcf_parser
  Simple vcf parser, based on PyVCF
  ☆48Updated 7 years ago
• KHP-Informatics / ngseasy
  Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
  ☆86Updated 8 years ago
• deaconjs / ThousandVariantCallersRepo
  Thousand Variant Callers Project Repository
  ☆74Updated 6 years ago
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆80Updated last month
• gatk-workflows / five-dollar-genome-analysis-pipeline
  Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
  ☆57Updated 5 years ago
• openvar / variantValidator
  Public repository for VariantValidator project
  ☆79Updated this week
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆128Updated 5 years ago
• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆60Updated 7 years ago
• opencb / iva
  Generic Interactive Variant Analysis browser
  ☆29Updated 3 years ago
• biopet / biopet
  Biopet docs
  ☆17Updated 7 years ago
• adamstruck / cwl2wdl
  Convert CWL to WDL
  ☆17Updated 9 years ago
• biothings / myvariant.info
  MyVariant.info: A BioThings API for human variant annotations
  ☆96Updated 4 months ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago
• PapenfussLab / PathOS
  PathOS is a clinical application for filtering, analysing and reporting on NGS variants
  ☆29Updated 4 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆110Updated 5 years ago
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆77Updated last month
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆94Updated last week
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 4 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• lh3 / bgt
  Flexible genotype query among 30,000+ samples whole-genome
  ☆94Updated 6 years ago
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 3 years ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated last month