Alternatives and similar repositories for beacon-elixir:

Users that are interested in beacon-elixir are comparing it to the libraries listed below

• Cibiv / Teaser
  A tool to benchmark mappers and different parameters within minutes
  ☆43Updated 5 years ago
• robinandeer / puzzle
  Variant caller GUI + genetic disease analysis
  ☆22Updated 4 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆40Updated 5 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• PapenfussLab / PathOS
  PathOS is a clinical application for filtering, analysing and reporting on NGS variants
  ☆28Updated 3 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆44Updated 10 months ago
• bow / crimson
  Bioinformatics tool outputs converter to JSON or YAML
  ☆36Updated 2 months ago
• mozack / abra
  Assembly Based ReAligner
  ☆72Updated 6 years ago
• galaxyproject / dunovo
  Reference-free duplex sequencing pipeline.
  ☆18Updated 2 years ago
• DKFZ-ODCF / DKFZBiasFilter
  ☆12Updated 3 years ago
• friend1ws / EBCall
  an empirical Bayesian framework for mutation detection from cancer genome sequencing data
  ☆31Updated 8 years ago
• Ensembl / ensembl-tools
  Ensembl tools
  ☆34Updated 3 months ago
• RahmanTeam / CAVA
  CAVA (Clinical Annotation of VAriants)
  ☆14Updated 6 years ago
• ryanlayer / stix
  Structural Variant Index
  ☆71Updated last month
• biopet / biopet
  Biopet docs
  ☆17Updated 6 years ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆78Updated last month
• Illumina / isaac2
  Aligner for sequencing data
  ☆21Updated 8 years ago
• brentp / bigly
  a pileup library that embraces the huge
  ☆42Updated 4 years ago
• statgen / gotcloud
  Genomes on the Cloud, Mapping & Variant Calling Pipelines
  ☆33Updated 7 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 3 years ago
• Steven-N-Hart / vcf-miner
  VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files
  ☆37Updated 5 years ago
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆56Updated 4 years ago
• gkno / gkno_launcher
  The gkno launcher for executing tools or pipelines
  ☆32Updated 8 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆52Updated 3 weeks ago
• ccgd-profile / BreaKmer
  A method to identify structural variation from sequencing data in target regions
  ☆31Updated 4 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• macarthur-lab / gnomad_browser
  gnomAD browser pre-ASHG 2018
  ☆33Updated 4 years ago
• Molmed / checkQC
  CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
  ☆26Updated 4 months ago
• tommyau / bamclipper
  Remove primer sequence from BAM alignments by soft-clipping
  ☆31Updated 5 years ago