cmap / cmapRLinks
Tools for manipulating annotated data matrices
☆93Updated 3 years ago
Alternatives and similar repositories for cmapR
Users that are interested in cmapR are comparing it to the libraries listed below
Sorting:
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆94Updated 8 months ago
- An R interface to enrichR☆92Updated 4 months ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆83Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 6 months ago
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆58Updated 4 years ago
- A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data☆28Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆74Updated 2 weeks ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆73Updated last month
- Content for the OSCA Book.☆66Updated 2 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 3 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆63Updated 3 years ago
- A Shiny web app for mapping datasets using Seurat v4☆130Updated 7 months ago
- R package for Pathway RespOnsive GENe activity inference☆106Updated 2 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Normalize CITEseq Data☆66Updated 2 months ago
- Toolbox with R scripts☆38Updated 6 years ago
- Linear trajectory inference for single-cell RNA-seq☆59Updated last year
- An R-based interface for loom files☆66Updated 4 years ago
- ☆66Updated 11 months ago
- Mouse cell atlas☆60Updated 5 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆30Updated last month
- Rphenograph: R implementation of the PhenoGraph algorithm☆48Updated 5 years ago
- Explore and share your scRNAseq clustering results☆50Updated last year
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- Immunology-related bioinformatics data and tools☆73Updated last year
- R package for the analysis of single-cell immune repertoires☆42Updated 4 months ago
- An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.☆27Updated 2 years ago