cmap / cmapRLinks
Tools for manipulating annotated data matrices
☆92Updated 3 years ago
Alternatives and similar repositories for cmapR
Users that are interested in cmapR are comparing it to the libraries listed below
Sorting:
- An R interface to enrichR☆92Updated 7 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆96Updated 11 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Toolbox with R scripts☆38Updated 6 years ago
- Updated implementation of the GSEA-P R application for modern R distributions☆97Updated 3 years ago
- Content for the OSCA Book.☆66Updated 2 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 9 months ago
- netZooR is a network biology package implemented in R.☆111Updated 3 weeks ago
- ☆32Updated 3 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆56Updated 2 years ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- Immunology-related bioinformatics data and tools☆73Updated last year
- ☆27Updated 4 years ago
- 📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny…☆104Updated last week
- An R toolkit for estimation of cell composition from bulk expression data☆78Updated 3 months ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆105Updated 2 years ago
- Clone of the Bioconductor repository for the scater package.☆97Updated 6 months ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- A General Framework for Consensus Partitioning☆63Updated 7 months ago
- Normalize CITEseq Data☆66Updated 5 months ago
- Bayesian network plot for the enrichment analysis results☆65Updated 11 months ago
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆109Updated 2 weeks ago
- A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data☆28Updated 4 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 2 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆106Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 10 months ago