Alternatives and similar repositories for lincs-workshop-2020

Users that are interested in lincs-workshop-2020 are comparing it to the libraries listed below

• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• cmap / cmapM
  Connectivity Map analysis in MATLAB
  ☆46Updated 3 years ago
• fraenkel-lab / OmicsIntegrator2
  Prize-Collecting Steiner Forests for Interactomes
  ☆61Updated last year
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆46Updated last year
• kekegg / DLEPS
  A Deep Learning based Efficacy Prediction System for drug discovery
  ☆71Updated 2 years ago
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆23Updated last month
• BergmannLab / MONET
  MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236
  ☆45Updated 4 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆68Updated last week
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆47Updated 3 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆50Updated last month
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆120Updated last month
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆23Updated 4 years ago
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆120Updated this week
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated 11 months ago
• joan-smith / comprehensive-tcga-survival
  Comprehensive survival analyses on the TCGA data.
  ☆18Updated 3 years ago
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆66Updated last year
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated 4 months ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆51Updated 3 months ago
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆59Updated last year
• singha53-zz / diablo
  DIABLO - an integrative multi-group, multi-dataset classification method
  ☆25Updated 6 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆35Updated 3 years ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆33Updated 5 months ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆62Updated 2 months ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• theislab / scgen-reproducibility
  ☆28Updated 4 years ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆148Updated this week
• GreiffLab / immuneSIM
  ☆38Updated last year