CMap Notebooks for LINCS 2020 Workshop
☆52Sep 23, 2021Updated 4 years ago
Alternatives and similar repositories for lincs-workshop-2020
Users that are interested in lincs-workshop-2020 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for manipulating annotated data matrices☆93Oct 13, 2021Updated 4 years ago
- EvoEF + evolutionary profile for ddG_bind prediction☆14Oct 17, 2025Updated 7 months ago
- ☆12Apr 17, 2024Updated 2 years ago
- workshop platform provider for running docker containers on kubernetes☆19Sep 14, 2021Updated 4 years ago
- An R package for analyzing high-dimensional cytometry data using the tidyverse.☆20Aug 25, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Interpretation of RNAseq experiments through robust, efficient comparison to public databases☆16Oct 31, 2025Updated 7 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 4 years ago
- Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries☆11Jan 26, 2025Updated last year
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆14May 28, 2026Updated last week
- Counterfactual generation of tumor perturbations from multiplexed tissue images☆24May 13, 2025Updated last year
- Phenotype Associated Spatial Signature Analysis with Graph-based Embedding☆26Mar 5, 2025Updated last year
- Analysis notebooks and data for AML hierarchies paper☆20Jun 28, 2023Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ChromDiff program as described in Yen and Kellis, Nature Communications 2015.☆14May 12, 2016Updated 10 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆29Jan 29, 2025Updated last year
- Tools for data analysis for the FDA Adverse Event Reporting System (FAERS) dataset☆44Oct 16, 2019Updated 6 years ago
- Learning a genome-wide score of conservation at the functional genomics level between human and mouse☆14Sep 23, 2022Updated 3 years ago
- ☆14Dec 2, 2024Updated last year
- Scripts supporting identification of genomic features affecting survival time in cancer☆14Dec 6, 2018Updated 7 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- Scripts associated with the 2023 Open Problems competition☆11Nov 23, 2023Updated 2 years ago
- ☆27Sep 24, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆10Dec 15, 2023Updated 2 years ago
- Convert Description Logic axioms into a graph, and generate embedding representation for the nodes.☆20Mar 5, 2023Updated 3 years ago
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆11Apr 28, 2025Updated last year
- ☆18May 15, 2026Updated 3 weeks ago
- CeSpGRN: Inferring cell specific GRN using single-cell gene expression data☆21Mar 23, 2026Updated 2 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Oct 25, 2024Updated last year
- Command line client and Python libraries for CosmosID API☆13Oct 28, 2025Updated 7 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 6 months ago
- Phenome Exome Association and Correlation Of Key phenotypes☆36Aug 19, 2021Updated 4 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Jan 15, 2020Updated 6 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆35Mar 12, 2025Updated last year
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆104Jul 7, 2022Updated 3 years ago
- Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)☆21Mar 8, 2026Updated 3 months ago