cmap / lincs-workshop-2020
CMap Notebooks for LINCS 2020 Workshop
☆45Updated 3 years ago
Alternatives and similar repositories for lincs-workshop-2020:
Users that are interested in lincs-workshop-2020 are comparing it to the libraries listed below
- Knowledge-primed neural networks☆35Updated last year
- Functional Embedding of Gene Signatures☆39Updated 11 months ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆64Updated 2 years ago
- repository containing analysis scripts and auxiliary files☆30Updated 4 years ago
- Connectivity Map analysis in MATLAB☆42Updated 3 years ago
- Python package to load and query ARCHS4 data☆15Updated last month
- Prize-Collecting Steiner Forests for Interactomes☆57Updated 7 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆59Updated 6 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆35Updated 3 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆47Updated this week
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆33Updated 2 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆114Updated this week
- ☆20Updated 3 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 7 years ago
- metadata and data from the database☆38Updated 5 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 3 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆29Updated 2 months ago
- ☆51Updated 2 years ago
- ☆41Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆64Updated this week
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆33Updated this week
- ☆37Updated last year
- DIABLO - an integrative multi-group, multi-dataset classification method☆21Updated 5 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆41Updated 5 months ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆35Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆23Updated 2 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆16Updated 4 years ago