GSEA-MSigDB / GSEA_RLinks
Updated implementation of the GSEA-P R application for modern R distributions
☆97Updated 3 years ago
Alternatives and similar repositories for GSEA_R
Users that are interested in GSEA_R are comparing it to the libraries listed below
Sorting:
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆96Updated 11 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 2 months ago
- An R interface to enrichR☆92Updated 7 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- published papers with a lot of data☆74Updated 5 months ago
- Cell types enrichment analysis☆200Updated last year
- A continually expanding collection of cancer genomics notes and data☆107Updated last month
- The package wrapping the book, for deployment via the Bioconductor build system.☆89Updated 10 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆192Updated 4 years ago
- Simplify functional enrichment results☆117Updated last year
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 10 months ago
- Immunology-related bioinformatics data and tools☆73Updated last year
- ☆86Updated 2 weeks ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆51Updated 5 years ago
- Interactively analyze single cell genomic data☆183Updated 3 weeks ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆102Updated 2 years ago
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆121Updated 5 years ago
- ☆72Updated 3 years ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- ☆62Updated 5 years ago
- Clone of the Bioconductor repository for the SingleR package.☆195Updated 2 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Tools for manipulating annotated data matrices☆92Updated 3 years ago
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- Code and data repository for the 2020 physalia course on single cell RNA sequencing.☆58Updated 5 years ago
- ☆71Updated 2 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆104Updated 2 years ago