girke-lab / signatureSearchLinks
R/Bioconductor package including the Gene Expression Signature Search (GESS), Function Enrichment Analysis (FEA) methods and supporting drug-target network construction for visualization
☆18Updated last year
Alternatives and similar repositories for signatureSearch
Users that are interested in signatureSearch are comparing it to the libraries listed below
Sorting:
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- R package for benchmarking single cell analysis methods☆32Updated last year
- An R-based interface for loom files☆66Updated 5 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- ☆15Updated 4 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- Tools for assessing clustering robustness☆25Updated last week
- Cancer Dependency Map package☆30Updated 11 months ago
- Inferring gene co-expression networks from single cell gene expression data☆26Updated 3 years ago
- A General Framework for Consensus Partitioning☆63Updated 6 months ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Heterogeneity Induced Pre-Processing tOol☆18Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- XEnograft Visualization & Analysis☆11Updated 4 months ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated 11 months ago
- A Tidy Framework to Hack Gene Expression Signatures☆19Updated 3 months ago
- ☆12Updated last year
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- ☆62Updated 4 months ago
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- ☆25Updated 2 months ago