Alternatives and similar repositories for signatureSearch

Users that are interested in signatureSearch are comparing it to the libraries listed below

• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated last month
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆51Updated 4 months ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆45Updated 2 years ago
• francescojm / ADAM
  Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens
  ☆23Updated 6 years ago
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆30Updated 2 months ago
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 5 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated last year
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆41Updated 3 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated 9 months ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆58Updated 8 months ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• theislab / Covid_meta_analysis
  Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…
  ☆25Updated 4 years ago
• Acare / hacksig
  A Tidy Framework to Hack Gene Expression Signatures
  ☆19Updated 2 months ago
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆62Updated 5 months ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 4 years ago
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆43Updated 5 years ago
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated last month
• DavisLaboratory / singscore
  An R/Bioconductor package that implements a single-sample molecular phenotyping approach
  ☆43Updated 7 months ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆22Updated 6 months ago
• wwylab / DeMixT
  ☆36Updated last year
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆31Updated last year
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆24Updated 2 years ago
• genesofeve / projectR
  ☆62Updated 3 months ago
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆36Updated 2 months ago
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆30Updated 11 months ago
• wgmao / PLIER
  Pathway-Level Information Extractor (PLIER): a generative model for gene expression data
  ☆54Updated 10 months ago
• paulgeeleher / pRRophetic
  R package
  ☆22Updated last year
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆24Updated 3 years ago
• bhklab / Xeva
  XEnograft Visualization & Analysis
  ☆11Updated 3 months ago