R/Bioconductor package including the Gene Expression Signature Search (GESS), Function Enrichment Analysis (FEA) methods and supporting drug-target network construction for visualization
☆23Mar 22, 2026Updated 2 months ago
Alternatives and similar repositories for signatureSearch
Users that are interested in signatureSearch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 3 years ago
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Mar 4, 2022Updated 4 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆13Jan 5, 2023Updated 3 years ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Nov 29, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Load bioinformatics datasets into a local database☆11Apr 8, 2025Updated last year
- Analysis tools for longevity research☆22Jul 23, 2017Updated 8 years ago
- ☆23May 9, 2026Updated 3 weeks ago
- cyREST examples for Python users.☆11Feb 20, 2018Updated 8 years ago
- Prioritizing Cancer Driver Genes Using Genomics Data☆17Dec 22, 2025Updated 5 months ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Identify Intra-, Inter-donor variations in bulk or single cell longitudinal dataset☆27Jul 31, 2023Updated 2 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- The QDECR package for vertex-wise analyses in R☆12May 26, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- GOAT: efficient and robust identification of gene set enrichment☆14Jan 24, 2026Updated 4 months ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 5 years ago
- Code used for Hippocampus Anterior/Posterior gene expression and neuroimaging analyses☆11May 18, 2023Updated 3 years ago
- Simplify functional enrichment results☆125Jan 30, 2026Updated 4 months ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 3 years ago
- Toolbox package for organizing and working with TCGA data☆29Updated this week
- Drug Response Estimation from single-cell Expression Profiles☆12Jan 5, 2024Updated 2 years ago
- As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.☆12Jul 30, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆12Mar 1, 2025Updated last year
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- SAveRUNNER (Searching off-lAbel dRUg aNd NEtwoRk) - a network-based approach for drug repurposing☆13Nov 27, 2024Updated last year
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- ☆47Jan 11, 2024Updated 2 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 2 years ago
- analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…☆11Aug 1, 2021Updated 4 years ago
- ☆13Dec 29, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MeSH Enrichment and Semantic analyses☆12Apr 29, 2026Updated last month
- Multi-modality brain-age analysis in the UK Biobank☆13Mar 4, 2020Updated 6 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 3 years ago
- (DRExM³L) Drug REpurposing using eXplainable Machine Learning and Mechanistic Models of signal transduction☆12Nov 20, 2025Updated 6 months ago
- Exploring intrinsic gradients of the AHBA☆16Jan 23, 2025Updated last year
- Subtype and Stage Inference [Young+, Nature Communications 2018]☆14May 6, 2021Updated 5 years ago
- Data and code for the Effector index☆14Oct 13, 2020Updated 5 years ago