girke-lab / signatureSearchLinks
R/Bioconductor package including the Gene Expression Signature Search (GESS), Function Enrichment Analysis (FEA) methods and supporting drug-target network construction for visualization
☆19Updated last year
Alternatives and similar repositories for signatureSearch
Users that are interested in signatureSearch are comparing it to the libraries listed below
Sorting:
- Explore the cancer relevance of your gene list☆51Updated 6 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 5 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- Course Materials for Genomics Data Mining☆22Updated last week
- XEnograft Visualization & Analysis☆11Updated 3 weeks ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 9 months ago
- Identify and correct invalid gene symbols☆59Updated 9 months ago
- ☆62Updated 5 months ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- ☆15Updated 4 years ago
- A General Framework for Consensus Partitioning☆63Updated 7 months ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- ☆12Updated last year
- An r package that works as a wrapper to homologene☆46Updated last year
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 8 months ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 2 weeks ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated last year
- Cancer Dependency Map package☆30Updated last year
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Explore and download data from the recount3 project☆36Updated 3 months ago
- R package for benchmarking single cell analysis methods☆32Updated last year