Alternatives and similar repositories for pRRophetic2:

Users that are interested in pRRophetic2 are comparing it to the libraries listed below

• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆31Updated 3 years ago
• eudoraleer / HTCA
  HTCA Analysis Tools
  ☆4Updated 2 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• liuhong-jia / scAnno
  ☆23Updated last year
• paulgeeleher / pRRophetic
  R package
  ☆22Updated last year
• miccec / yaGST
  ☆13Updated 7 years ago
• dfci / pancanmet_analysis
  Software and analysis of metabolism studies across multiple cancer types
  ☆9Updated 7 years ago
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆24Updated 2 years ago
• ventolab / HECA-Human-Endometrial-Cell-Atlas
  Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.
  ☆24Updated 8 months ago
• showteeth / scfetch
  Access and Format Single-cell RNA-seq Datasets from Public Resources
  ☆35Updated 2 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆23Updated 2 years ago
• CICAMS-Liu-lab / ECGEA
  ☆17Updated 4 years ago
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆29Updated 8 months ago
• YeoLab / Expedition
  Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data
  ☆11Updated 7 years ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• lydiaMyr / ImmuCellAI
  ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…
  ☆14Updated last year
• SCA-IRCM / SingleCellSignalR
  R package for Bioconductor submission
  ☆33Updated 2 years ago
• reedliu / scRNA-codes
  ☆17Updated 5 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆39Updated 11 months ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 3 months ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆14Updated 6 months ago
• XZouProjects / scCODE
  The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
  ☆13Updated last year
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆26Updated 4 years ago
• zpliulab / scGENA
  single cell Gene co-Expression Network Analysis
  ☆9Updated 2 years ago
• compbioNJU / CellFunTopic
  Functional Annotation for Single-Cell Transcriptomics
  ☆10Updated 7 months ago
• xiayh17 / RNAseqStat2
  ☆16Updated last year