Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
☆140Jul 19, 2022Updated 3 years ago
Alternatives and similar repositories for cmapPy
Users that are interested in cmapPy are comparing it to the libraries listed below
Sorting:
- Connectivity Map analysis in MATLAB☆48Dec 10, 2021Updated 4 years ago
- Tools for manipulating annotated data matrices☆93Oct 13, 2021Updated 4 years ago
- L1000 peak deconvolution based on Bayesian analysis☆28Oct 10, 2021Updated 4 years ago
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆44Dec 20, 2023Updated 2 years ago
- ☆19Mar 21, 2024Updated last year
- ☆15Aug 13, 2023Updated 2 years ago
- ☆17Apr 19, 2021Updated 4 years ago
- repository containing analysis scripts and auxiliary files☆37Apr 9, 2020Updated 5 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 3 years ago
- ☆13Dec 29, 2021Updated 4 years ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆74Nov 22, 2022Updated 3 years ago
- Deep learning for gene expression inference☆145Feb 18, 2019Updated 7 years ago
- Implementation of ReSimNet for drug response similarity prediction☆40Dec 20, 2023Updated 2 years ago
- ☆29Aug 29, 2023Updated 2 years ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆334Feb 1, 2025Updated last year
- ☆20Aug 28, 2022Updated 3 years ago
- CliXO algorithm re-implemented☆16Nov 9, 2021Updated 4 years ago
- Inference of gene dependency from RNAi screening datasets.☆19Apr 9, 2020Updated 5 years ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆17Feb 10, 2023Updated 3 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆52Mar 27, 2021Updated 4 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆53Aug 11, 2025Updated 6 months ago
- JavaScript-based pathway viewer and editor☆35Feb 20, 2025Updated last year
- ☆17Apr 28, 2020Updated 5 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆61Nov 26, 2020Updated 5 years ago
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆113Apr 2, 2022Updated 3 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell lev…☆184Sep 7, 2023Updated 2 years ago
- ☆11Dec 17, 2025Updated 2 months ago
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 8 years ago
- ☆11Apr 1, 2024Updated last year
- ☆74Jul 6, 2023Updated 2 years ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆145Feb 6, 2025Updated last year
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆23May 25, 2020Updated 5 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Apr 15, 2022Updated 3 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Oct 15, 2025Updated 4 months ago
- ☆11Mar 1, 2025Updated 11 months ago
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- ☆10Sep 26, 2019Updated 6 years ago
- ☆10Jun 5, 2021Updated 4 years ago