Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
☆140Jul 19, 2022Updated 3 years ago
Alternatives and similar repositories for cmapPy
Users that are interested in cmapPy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Connectivity Map analysis in MATLAB☆49Dec 10, 2021Updated 4 years ago
- Tools for manipulating annotated data matrices☆93Oct 13, 2021Updated 4 years ago
- L1000 peak deconvolution based on Bayesian analysis☆28Oct 10, 2021Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- ☆13Dec 29, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A Deep Learning based Efficacy Prediction System for drug discovery☆75Nov 22, 2022Updated 3 years ago
- ☆19Jul 8, 2021Updated 4 years ago
- Implementation of ReSimNet for drug response similarity prediction☆40Dec 20, 2023Updated 2 years ago
- ☆29Aug 29, 2023Updated 2 years ago
- repository containing analysis scripts and auxiliary files☆38Apr 9, 2020Updated 6 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆52Mar 27, 2021Updated 5 years ago
- ☆17Apr 28, 2020Updated 5 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 3 years ago
- RCSM(Recommended Connectivity-map Scoring Methods)☆17Aug 2, 2019Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆20Aug 28, 2022Updated 3 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- ☆17Apr 19, 2021Updated 4 years ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆17Feb 10, 2023Updated 3 years ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆352Feb 1, 2025Updated last year
- Relative Expression Ordering Analysis (REOA) package☆21Nov 12, 2022Updated 3 years ago
- ☆11Mar 1, 2025Updated last year
- ☆15Aug 13, 2023Updated 2 years ago
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆113Apr 2, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ARCHS4 RNA-seq processing scripts and web server pages.☆61Nov 26, 2020Updated 5 years ago
- Inference of gene dependency from RNAi screening datasets.☆19Apr 9, 2020Updated 6 years ago
- Source code for the DeepViral paper☆11Mar 17, 2021Updated 5 years ago
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 8 years ago
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆12Jan 25, 2024Updated 2 years ago
- ☆74Jul 6, 2023Updated 2 years ago
- GNN enabled surrogate modeling for chemical docking☆16Nov 3, 2022Updated 3 years ago
- Fits a Principal Curve in Arbitrary Dimension ⤵☆44Jan 16, 2025Updated last year
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆16Oct 11, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆11Apr 1, 2024Updated 2 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆28Mar 8, 2021Updated 5 years ago
- ☆15Jun 13, 2025Updated 9 months ago
- Biology-centered data-driven quality control for scRNA-seq☆20May 22, 2023Updated 2 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 7 years ago
- A graphical interface for sklearn classification to introduce machine learning to biologists☆14Mar 19, 2025Updated last year