Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
☆145Jul 19, 2022Updated 4 years ago
Alternatives and similar repositories for cmapPy
Users that are interested in cmapPy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Connectivity Map analysis in MATLAB☆51Dec 10, 2021Updated 4 years ago
- Tools for manipulating annotated data matrices☆95Oct 13, 2021Updated 4 years ago
- L1000 peak deconvolution based on Bayesian analysis☆28Jul 16, 2026Updated 3 weeks ago
- RCSM(Recommended Connectivity-map Scoring Methods)☆18Aug 2, 2019Updated 7 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆47Dec 20, 2023Updated 2 years ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆74Nov 22, 2022Updated 3 years ago
- ☆13Dec 29, 2021Updated 4 years ago
- ☆29Aug 29, 2023Updated 2 years ago
- Implementation of ReSimNet for drug response similarity prediction☆40Dec 20, 2023Updated 2 years ago
- repository containing analysis scripts and auxiliary files☆39Apr 9, 2020Updated 6 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆57Mar 27, 2021Updated 5 years ago
- ☆22Aug 28, 2022Updated 3 years ago
- Relative Expression Ordering Analysis (REOA) package☆21Nov 12, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆19Mar 21, 2024Updated 2 years ago
- Deep learning for gene expression inference☆148Feb 18, 2019Updated 7 years ago
- ☆17Apr 19, 2021Updated 5 years ago
- ☆12Mar 1, 2025Updated last year
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆115Apr 2, 2022Updated 4 years ago
- ☆15Aug 13, 2023Updated 2 years ago
- Inference of gene dependency from RNAi screening datasets.☆19Apr 9, 2020Updated 6 years ago
- Source code for the DeepViral paper☆12Mar 17, 2021Updated 5 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell lev…☆186Sep 7, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 4 years ago
- ☆74Jul 6, 2023Updated 3 years ago
- GNN enabled surrogate modeling for chemical docking☆16Nov 3, 2022Updated 3 years ago
- [NBME] Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning☆24Sep 2, 2025Updated 11 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆390Feb 1, 2025Updated last year
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆29Mar 8, 2021Updated 5 years ago
- ☆11Apr 1, 2024Updated 2 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- ☆15Jun 13, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆19Mar 7, 2020Updated 6 years ago
- A graphical interface for sklearn classification to introduce machine learning to biologists☆14Mar 19, 2025Updated last year
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 8 years ago
- NeST-VNN repo☆12Jun 13, 2025Updated last year
- ☆57May 22, 2018Updated 8 years ago
- ☆15Nov 16, 2023Updated 2 years ago
- ☆14Feb 3, 2023Updated 3 years ago