Alternatives and similar repositories for orsum

Users that are interested in orsum are comparing it to the libraries listed below

• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆63Updated last month
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆55Updated 2 years ago
• alserglab / phantasus
  Visual exploratory analysis of gene expression data
  ☆44Updated last month
• JoachimGoedhart / VolcaNoseR
  Shiny app for making and annotating Volcano plots
  ☆25Updated last year
• crazyhottommy / machine-learning-resource
  ☆84Updated last year
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated 3 weeks ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆47Updated 6 months ago
• Huber-group-EMBL / biomaRt
  R package providing query functionality to BioMart instances like Ensembl
  ☆43Updated last month
• snystrom / memes
  An R interface to the MEME Suite
  ☆53Updated 5 months ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• brennanpincardiff / drawProteins
  Creating package to draw proteins from Uniprot API
  ☆35Updated last year
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆30Updated last year
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆70Updated 9 months ago
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆67Updated last year
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆35Updated 5 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆57Updated 6 months ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated last week
• asntech / pyjaspar
  pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
  ☆34Updated last month
• ssayols / rrvgo
  Reduce + Visualize Gene Ontology
  ☆34Updated 4 months ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomics ecosystem
  ☆72Updated last month
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆61Updated 2 years ago
• dohlee / snakemake-wrappers
  Snakemake wrappers for bioinformatics.
  ☆18Updated 2 years ago
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆21Updated 2 years ago
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆37Updated 2 months ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• dariober / bioinformatics-cafe
  Unsorted scripts for bioinformatics
  ☆61Updated 4 years ago
• nf-core / proteomicslfq
  Proteomics label-free quantification (LFQ) analysis pipeline
  ☆37Updated 10 months ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆120Updated last year