ozanozisik / orsumView external linksLinks
☆11Mar 1, 2025Updated 11 months ago
Alternatives and similar repositories for orsum
Users that are interested in orsum are comparing it to the libraries listed below
Sorting:
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- RCSM(Recommended Connectivity-map Scoring Methods)☆17Aug 2, 2019Updated 6 years ago
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Mar 4, 2022Updated 3 years ago
- reverse gene expression score☆15Sep 8, 2023Updated 2 years ago
- Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/clien…☆12May 28, 2022Updated 3 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆27Aug 21, 2024Updated last year
- Connect the dots in networks.☆20Aug 28, 2020Updated 5 years ago
- Courses & workshops led by members of the Krishnan Lab.☆23Sep 7, 2025Updated 5 months ago
- https://www.translation.manchester.ac.uk/training/☆15Nov 8, 2023Updated 2 years ago
- Tools for manipulating annotated data matrices☆93Oct 13, 2021Updated 4 years ago
- GOAT: efficient and robust identification of gene set enrichment☆14Jan 24, 2026Updated 3 weeks ago
- Calculate DNA methylation age using Horvath 2013 method☆11Aug 25, 2017Updated 8 years ago
- Personalized Network-based Anti-Cancer Therapy Appointment☆10Dec 22, 2025Updated last month
- Sample relational database load scripts and SQL queries for processing SNOMED CT-AU RF2 release files.☆18Jul 17, 2024Updated last year
- RAG + Semantic Search for Apple Notes☆13Feb 27, 2025Updated 11 months ago
- cyREST examples for Python users.☆11Feb 20, 2018Updated 7 years ago
- Comparison of single cell normalization strategies☆10Aug 13, 2021Updated 4 years ago
- RNASeq-Pipeline for Quantification and Enrichment Analysis☆12May 30, 2024Updated last year
- SAveRUNNER (Searching off-lAbel dRUg aNd NEtwoRk) - a network-based approach for drug repurposing☆11Nov 27, 2024Updated last year
- ☆10Mar 5, 2019Updated 6 years ago
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆12Oct 14, 2025Updated 4 months ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆13Aug 20, 2025Updated 5 months ago
- Genome free discovery and classification of miRNAs from small RNA-Seq with random forests☆11Jun 12, 2018Updated 7 years ago
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆11Oct 10, 2022Updated 3 years ago
- [Moved to https://github.com/standardnotes/app]☆10May 26, 2022Updated 3 years ago
- analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…☆11Aug 1, 2021Updated 4 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆14Oct 20, 2023Updated 2 years ago
- Materials for the 2019 uncoast unconference☆11Apr 26, 2019Updated 6 years ago
- (DRExM³L) Drug REpurposing using eXplainable Machine Learning and Mechanistic Models of signal transduction☆12Nov 20, 2025Updated 2 months ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- Rebuild of AskOmics☆14Aug 12, 2025Updated 6 months ago
- ☆10Jul 29, 2020Updated 5 years ago
- Python code used to train and evaluate segmentation networks for renal histopathological analysis☆15Jun 11, 2021Updated 4 years ago
- Temporal Pathway Synthesizer☆17Jun 28, 2024Updated last year
- ☆11Apr 17, 2023Updated 2 years ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated last year
- Python implementation of Smith Waterman Algorithm☆13Jul 25, 2023Updated 2 years ago