neurodata / CloudReg
CloudReg
☆11Updated last year
Alternatives and similar repositories for CloudReg:
Users that are interested in CloudReg are comparing it to the libraries listed below
- Segmentation of anatomical structures in a common coordinate space☆32Updated this week
- Standalone cellfinder cell detection algorithm☆19Updated last year
- Brainways☆16Updated last week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Loading and saving of image data.☆10Updated last year
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated this week
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 6 months ago
- ☆18Updated 3 years ago
- ☆22Updated last month
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated this week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 2 months ago
- ☆18Updated 3 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- 3-D imaging visualisation through slicing☆29Updated 3 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆21Updated this week
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆40Updated 3 weeks ago
- Fast, volumetric cell detection. In development.☆17Updated last week
- ☆34Updated last year
- Visualise brainreg registration output☆10Updated 3 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆133Updated 3 weeks ago
- ☆45Updated 4 years ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- Tools for distributed alignment of massive images☆81Updated 3 weeks ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year