funkelab / linajea
☆18Updated last year
Alternatives and similar repositories for linajea:
Users that are interested in linajea are comparing it to the libraries listed below
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 weeks ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- Python package for deep learning based image to image transformation☆52Updated 10 months ago
- ☆31Updated 2 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆34Updated 2 years ago
- Process images using SimpleITK in napari☆20Updated 6 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated this week
- ☆25Updated 4 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- QuPath extension for Cellsparse☆18Updated 4 months ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- Piecewise alignment for layers of mosaics☆24Updated last week
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆28Updated 9 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- ☆12Updated 8 months ago
- ☆12Updated 4 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 6 months ago
- ilastik plugin for napari☆14Updated last year
- ☆22Updated last year
- ☆16Updated 2 years ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆34Updated 2 years ago
- Resources for Heinrich et al., 2021☆18Updated 3 years ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 2 weeks ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- Microsopic Image Analyzer (MIA)☆29Updated last year
- A napari plugin for clustering objects according to their properties.☆83Updated this week
- ☆20Updated last week