Alternatives and similar repositories for linajea

Users that are interested in linajea are comparing it to the libraries listed below

• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 6 months ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated 11 months ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆57Updated 2 months ago
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆39Updated 3 weeks ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated last month
• BBQuercus / deepBlink
  Threshold independent detection and localization of diffraction-limited spots.
  ☆34Updated 2 years ago
• haesleinhuepf / napari-simpleitk-image-processing
  Process images using SimpleITK in napari
  ☆21Updated 2 weeks ago
• gioda / FeARLesS
  4D reconstruction of developmental trajectories using spherical harmonics
  ☆22Updated last month
• juglab / DecoNoising
  ☆11Updated 4 years ago
• clEsperanto / i2k2020_tutorial_clij_clesperanto
  ☆12Updated 4 years ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• tlambert03 / LLSpy
  Lattice light-sheet post-processing utility.
  ☆28Updated last week
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated 2 weeks ago
• marrlab / BaSiC
  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
  ☆58Updated 2 months ago
• trasse / OpSeF-IV
  ☆25Updated 4 years ago
• haesleinhuepf / napari-workflows
  ☆12Updated 9 months ago
• DanuserLab / u-segment3D
  Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…
  ☆17Updated 2 months ago
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆21Updated 5 years ago
• juglab / HDN
  This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise re…
  ☆35Updated last year
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated last month
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated 2 weeks ago
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆35Updated 8 months ago
• AllenCell / aics-ml-segmentation
  ☆31Updated 2 years ago
• quantumjot / CellTracking
  Cell tracking using TensorFlow and BayesianTracker
  ☆22Updated 3 years ago
• juglab / napari-n2v
  A self-supervised denoising algorithm.
  ☆25Updated last year
• NEUBIAS / neubias-springer-book-2021
  The repository of NEUBIAS textbook 2021
  ☆10Updated 3 years ago
• ilastik / ilastik-napari
  ilastik plugin for napari
  ☆14Updated last year
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 3 months ago
• lacan / microscopy-icons
  Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/
  ☆11Updated 2 years ago