funkelab / linajeaLinks
☆18Updated 2 years ago
Alternatives and similar repositories for linajea
Users that are interested in linajea are comparing it to the libraries listed below
Sorting:
- simple package for augmentation of n-dimensional arrays☆34Updated 2 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆38Updated 3 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆64Updated 10 months ago
- Python package for deep learning based image to image transformation☆53Updated 2 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 4 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- ☆32Updated 6 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- ☆24Updated 5 years ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Updated 10 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- QuPath extension for Cellsparse☆19Updated 9 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 9 months ago
- A self-supervised denoising algorithm.☆28Updated last year
- A python algorithm for tracking cells in 3D deforming organs☆67Updated 2 months ago
- A napari plugin for clustering objects according to their properties.☆90Updated 2 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- Advanced Tool for Labeling And Segmentation☆40Updated last year
- The repository of NEUBIAS textbook 2021☆11Updated 4 years ago
- Process images using SimpleITK in napari☆23Updated 9 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- Piecewise alignment for layers of mosaics☆35Updated 5 months ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆31Updated 2 weeks ago
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆22Updated 2 weeks ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆84Updated 2 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆25Updated last year
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆88Updated 3 weeks ago