Alternatives and similar repositories for linajea

Users that are interested in linajea are comparing it to the libraries listed below

• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆59Updated 6 months ago
• BBQuercus / deepBlink
  Threshold independent detection and localization of diffraction-limited spots.
  ☆38Updated 3 years ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆34Updated 3 months ago
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆40Updated 8 months ago
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated 2 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆61Updated last year
• AllenCell / aics-ml-segmentation
  ☆32Updated 5 months ago
• quantumjot / CellTracking
  Cell tracking using TensorFlow and BayesianTracker
  ☆22Updated 4 years ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated last month
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 5 years ago
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆87Updated this week
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 8 months ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆34Updated 2 years ago
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆42Updated 4 years ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆83Updated 2 months ago
• trasse / OpSeF-IV
  ☆24Updated 5 years ago
• marrlab / BaSiC
  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
  ☆64Updated 10 months ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 3 months ago
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D deforming organs
  ☆67Updated 2 months ago
• juglab / napari-n2v
  A self-supervised denoising algorithm.
  ☆28Updated last year
• biocompibens / SME
  Smooth 2D manifold extraction from 3D image stack
  ☆21Updated 7 years ago
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆89Updated last month
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆47Updated 4 months ago
• MultimodalImagingCenter / MiC
  MiC is an ImageJ plugin to compare segmentation masks
  ☆19Updated 7 months ago
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆23Updated 5 years ago
• rosalindfranklininstitute / RedLionfish
  ☆36Updated last year
• AiviaCommunity / 3D-RCAN
  Three-dimensional residual channel attention networks
  ☆55Updated 3 years ago
• mobie / mobie-viewer-fiji
  ☆41Updated 3 weeks ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆84Updated last year
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆71Updated last week