An R package for extracting mutational signatures from vcf files
☆11Feb 13, 2025Updated last year
Alternatives and similar repositories for mutSigExtractor
Users that are interested in mutSigExtractor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26Dec 18, 2024Updated last year
- MVP (Qi et al 2021) source code☆17May 11, 2021Updated 4 years ago
- Annotation and Prediction of Oncogenic Gene Fusions in RNAseq☆12Feb 20, 2016Updated 10 years ago
- A project - tutorial. Differential expression of RNAseq raw counts data using a Real world dataset in R. Packages covered 'DESeq2' and 'E…☆13Nov 18, 2022Updated 3 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆22Aug 17, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Prefix-renaming FASTA records really fast.☆17Jun 26, 2024Updated last year
- deconvolution for RNAseq and bisulfite sequencing☆11Aug 17, 2020Updated 5 years ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Jul 24, 2025Updated 8 months ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 6 years ago
- Model-based tumour subclonal deconvolution using population genetics☆35Dec 2, 2025Updated 4 months ago
- Execute command line tool from R☆20Mar 17, 2026Updated 3 weeks ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 2 years ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆41Nov 28, 2023Updated 2 years ago
- Image classification using SVM, KNN, Bayes, Adaboost, Random Forest and CNN.Extracting features and reducting feature dimension using T-S…☆13Aug 12, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Aug 17, 2023Updated 2 years ago
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022☆18Oct 20, 2022Updated 3 years ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆12Dec 15, 2025Updated 3 months ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15May 14, 2025Updated 10 months ago
- Neural Network for Polygenic score analysis☆16Jan 25, 2023Updated 3 years ago
- Translate online plugin for GoldenDict☆14Apr 14, 2023Updated 2 years ago
- ☆18Oct 31, 2023Updated 2 years ago
- A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).☆35Mar 28, 2026Updated 2 weeks ago
- This is code for running Orthofinder -> PAML☆12Jul 27, 2016Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆11Sep 4, 2024Updated last year
- A CNN based model to predict the efficacy of Cas12a sgRNAs in diagnostic scenarios.☆12Feb 29, 2024Updated 2 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated last year
- Updated rf-src code for forthcoming RF-SLAM package.☆15Oct 9, 2020Updated 5 years ago
- Python code to extract features from Protein sequences for Machine Learning/Deep Learning☆20Mar 26, 2022Updated 4 years ago
- CDS prediction in transcripts☆24Mar 5, 2025Updated last year
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. …☆24Jun 3, 2023Updated 2 years ago
- ☆14Oct 27, 2025Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Genome Assembly 102☆17Apr 23, 2025Updated 11 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆92Sep 16, 2025Updated 6 months ago
- Six hour hands-on to creating publication-quality plots in R☆43Mar 20, 2026Updated 3 weeks ago
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 6 months ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using genome data.☆13Aug 19, 2024Updated last year