UMCUGenetics / mutSigExtractor
An R package for extracting mutational signatures from vcf files
☆10Updated last month
Alternatives and similar repositories for mutSigExtractor:
Users that are interested in mutSigExtractor are comparing it to the libraries listed below
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Updated 2 years ago
- A framework to infer mutational signatures in cancer over time☆53Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 3 months ago
- Published at Bioinformatics☆12Updated 9 months ago
- miRTrace☆8Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Easy Copy Number !☆21Updated 3 years ago
- ☆19Updated 9 months ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated last month
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ☆23Updated 2 years ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆25Updated 2 years ago
- iread☆24Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆20Updated 4 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 8 months ago
- Mean Alterations Using Discrete Expression☆14Updated 11 months ago
- ☆15Updated last year
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- hands-on for NGS/SNParray CNV call trainning☆17Updated 2 years ago
- ☆22Updated last month
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆12Updated 5 months ago