UMCUGenetics / mutSigExtractor
An R package for extracting mutational signatures from vcf files
☆9Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for mutSigExtractor
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- A framework to infer mutational signatures in cancer over time☆53Updated 5 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- Published at Bioinformatics☆12Updated 4 months ago
- ☆19Updated 5 months ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆15Updated 3 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆19Updated last year
- ☆15Updated 5 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆38Updated 2 years ago
- ☆19Updated 5 months ago
- ☆20Updated last year
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆18Updated last month
- Toolkit for single-cell copy number analysis☆18Updated 3 weeks ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- ☆23Updated 2 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last year
- cross-species analysis of cell identities, markers and regulations☆12Updated last week
- Codes to regenerate figures for mutagen paper☆11Updated 3 years ago
- hands-on for NGS/SNParray CNV call trainning☆17Updated 2 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆18Updated 2 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆27Updated 2 years ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆23Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆19Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 2 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆11Updated last year
- Perturb-seq analysis package☆14Updated 6 months ago