Machine learning-based integration model with elegant performance
☆208Sep 23, 2025Updated 11 months ago
Alternatives and similar repositories for Mime
Users that are interested in Mime are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Machine learning-based integrative analysis develops an immune-derived lncRNA signature for improving clinical outcomes in colorectal can…☆134May 30, 2025Updated last year
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆293Jul 23, 2026Updated last month
- An implement R package to visualize GSEA results☆235Jul 14, 2026Updated last month
- 📦R包：Make TCGA download and prepare easy!☆156Sep 19, 2025Updated 11 months ago
- The integration of single cell rank-based gene set enrichment analysis☆157Jan 14, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Identification and Validation Robust Prognostic Biomarkers and Signatures in Solid Tumors☆63Apr 1, 2025Updated last year
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆83Dec 16, 2023Updated 2 years ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆149Jul 19, 2021Updated 5 years ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jul 30, 2026Updated last month
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆54Jan 21, 2026Updated 7 months ago
- ☆411Jan 21, 2026Updated 7 months ago
- Scissor package☆274May 10, 2024Updated 2 years ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆672Mar 11, 2026Updated 5 months ago
- Useful functions to make your scRNA-seq plot more cool!☆399Apr 18, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Quantifying metabolism activity at the single-cell resolution☆195Aug 20, 2026Updated last week
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆16Jun 30, 2024Updated 2 years ago
- Methods to discover gene programs on single-cell data☆207Jul 21, 2026Updated last month
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆249Apr 3, 2026Updated 4 months ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,192Updated this week
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆279Jul 10, 2026Updated last month
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 9 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆266Jul 8, 2026Updated last month
- ☆14Dec 15, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆33Feb 26, 2025Updated last year
- A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME,…☆125Mar 28, 2025Updated last year
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆95Oct 9, 2024Updated last year
- Hierarchical Cell Annotation☆32Nov 17, 2024Updated last year
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆77Oct 16, 2025Updated 10 months ago
- A R package for advanced single cell data viz☆75Aug 29, 2025Updated last year
- An R package for single-cell and spatial omics analysis, integration, interpretation, and visualization.☆300Updated this week
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Enrichment Networks for Pathway Enrichment Analysis☆75Apr 14, 2023Updated 3 years ago
- Explainable Machine Learning in Survival Analysis☆119Jun 15, 2024Updated 2 years ago
- The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …☆98Mar 27, 2023Updated 3 years ago
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆88Jul 20, 2025Updated last year
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated 2 years ago
- R code used to analyze single cell PDAC data☆42Jun 29, 2024Updated 2 years ago
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆321Updated this week