Parametric sweep of simulated microbial communities and metagenomic sequencing.
☆11Jul 15, 2022Updated 4 years ago
Alternatives and similar repositories for meta-sweeper
Users that are interested in meta-sweeper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 8 years ago
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- Consensus assembly and variant calling workflow.☆12May 26, 2015Updated 11 years ago
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An attempt to make HLA typing from OxfordNanopore reads (MinION platform)☆13Aug 20, 2018Updated 8 years ago
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 9 months ago
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.☆12Nov 21, 2020Updated 5 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago
- MetaPORE – Chiu Laboratory, University of California, San Francisco☆12Nov 4, 2015Updated 10 years ago
- Workflows I find helpful for fungal genome annotation☆22Jun 30, 2023Updated 3 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Mar 22, 2021Updated 5 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 6 years ago
- ☆63Sep 15, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- A pipeline for Human GWAS analysis that accomodates both Affymetrix (raw .CEL files) and Illumina (Plink binaries) data☆13May 14, 2018Updated 8 years ago
- An example of a data analysis pipeline using Make☆17Jul 26, 2016Updated 10 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- Genotype Imputation Pipeline for H3Africa☆26Nov 5, 2024Updated last year
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- An algorithm for recovering haplotypes from metagenomes☆30Jun 29, 2021Updated 5 years ago
- Simulate metagenomic short reads from one or more populations.☆26Jan 29, 2025Updated last year
- Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main seque…☆20Aug 30, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 7 years ago
- Data Hub makes lab instrument data instantly accessible to people, pipelines, and agents☆16Updated this week
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Feb 2, 2017Updated 9 years ago
- The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.☆37Apr 13, 2024Updated 2 years ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- de Bruijn Graph-based read aligner☆11Jul 19, 2016Updated 10 years ago
- Interactive tree visualizations in Python (powered by Vega).☆11Sep 26, 2019Updated 7 years ago
- ViraPipe is distributed Apache Spark based metagenome analytics pipeline for scalable detection of pathogens from NGS data☆17Jul 3, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PhylOTU identifies microbial OTUs from metagenomic data☆24May 16, 2013Updated 13 years ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 9 years ago
- GATK4 Best Practice Nextflow Pipeline☆35Jan 18, 2018Updated 8 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- An automated RNA-seq pipeline using Nextflow☆37Dec 17, 2025Updated 10 months ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Jun 13, 2026Updated 4 months ago