Parametric sweep of simulated microbial communities and metagenomic sequencing.
☆11Jul 15, 2022Updated 3 years ago
Alternatives and similar repositories for meta-sweeper
Users that are interested in meta-sweeper are comparing it to the libraries listed below
Sorting:
- MetaPORE – Chiu Laboratory, University of California, San Francisco☆12Nov 4, 2015Updated 10 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 5 years ago
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 6 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 5 years ago
- A pipeline for Human GWAS analysis that accomodates both Affymetrix (raw .CEL files) and Illumina (Plink binaries) data☆12May 14, 2018Updated 7 years ago
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 6 years ago
- An example of a data analysis pipeline using Make☆17Jul 26, 2016Updated 9 years ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- Genotype Imputation Pipeline for H3Africa☆24Nov 5, 2024Updated last year
- Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main seque…☆18Aug 30, 2018Updated 7 years ago
- Workflows I find helpful for fungal genome annotation☆21Jun 30, 2023Updated 2 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 5 years ago
- Simulate metagenomic short reads from one or more populations.☆26Jan 29, 2025Updated last year
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Feb 2, 2017Updated 9 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Mar 22, 2021Updated 4 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- ☆29May 2, 2024Updated last year
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Web content for Meren Lab☆11Feb 23, 2026Updated last week
- ☆14Jul 4, 2015Updated 10 years ago
- Bash script to download all lecture videos & notes for a particular course on Coursera.org.☆13Dec 25, 2015Updated 10 years ago
- This project provides a series of modules which enable functions of the Vascular Modeling Toolkit (http://www.vmtk.org) in 3D Slicer (htt…☆16Mar 22, 2013Updated 12 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆48Feb 3, 2026Updated last month
- An automated RNA-seq pipeline using Nextflow☆37Dec 17, 2025Updated 2 months ago
- Pipeline to generate NGS reads from a phylogeny☆39Sep 13, 2022Updated 3 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- ☆10Feb 28, 2018Updated 8 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- DNA as an information storage medium using either 4-base codon or binary representations of 256-ASCII☆11Sep 6, 2013Updated 12 years ago
- Repo to store examples for my "gRPC: Beyond the basics" blog☆10Dec 14, 2017Updated 8 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- ☆15Apr 2, 2025Updated 11 months ago
- ☆11Mar 10, 2024Updated last year
- HawtDB is an embedded MVCC Key/Value Database☆21Aug 28, 2011Updated 14 years ago