cerebis / meta-sweeper
Parametric sweep of simulated microbial communities and metagenomic sequencing.
☆10Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for meta-sweeper
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- StrainEst - abundance estimation of strains☆21Updated 4 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- Find Unique genomic Regions☆29Updated this week
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated this week
- A set of programs for the taxonomic analysis of genetic sequences☆12Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 8 months ago
- Automatic eukaryotic taxonomic classification☆28Updated last month
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆16Updated 6 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 9 years ago
- A method of assessing sequence complexity based on kmer frequencies☆28Updated 6 years ago
- Quickly get the taxonomy of a genome☆10Updated last year
- ☆28Updated 5 months ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- De novo Extraction of Strains from MetAgeNomes☆69Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated last year
- Whole genome core alignments from multiple draft genomes☆12Updated 8 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆32Updated last year
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- strain-level analysis tools☆33Updated last month
- Strain Prediction and Analysis with Representative SEquence☆18Updated 2 weeks ago
- ☆12Updated 3 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆24Updated 6 months ago