chilleo / ALPHALinks
A toolkit for automated local phylogenomic analyses, or ALPHA
☆13Updated 6 years ago
Alternatives and similar repositories for ALPHA
Users that are interested in ALPHA are comparing it to the libraries listed below
Sorting:
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- Infer demographic history with the Moran model☆50Updated 6 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Updated 7 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 10 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 10 months ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 4 years ago
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- A box of genomics tools☆21Updated 5 years ago
- ☆35Updated 5 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Updated 2 years ago
- A genome assembly assessment pipeline.☆38Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 5 years ago
- Visualising discordant reads☆15Updated 10 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- Tools and Utilities for msmc and msmc2☆49Updated 5 months ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- General purpose population genetics software☆15Updated 6 years ago
- Multi-genome synteny block visualization tool☆52Updated 2 months ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- ☆26Updated 10 months ago
- ☆46Updated 2 months ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 4 months ago