chilleo / ALPHALinks
A toolkit for automated local phylogenomic analyses, or ALPHA
☆13Updated 5 years ago
Alternatives and similar repositories for ALPHA
Users that are interested in ALPHA are comparing it to the libraries listed below
Sorting:
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- ☆32Updated 4 years ago
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago
- Genome Annotation Pipeline☆36Updated last year
- Haploidy and Size Completeness Estimation☆13Updated last year
- ☆43Updated 3 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- ☆26Updated 4 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 6 months ago
- orthology assignment using phylogenetic and network analyses☆45Updated 5 months ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Updated 7 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 4 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆38Updated 3 months ago
- Genome alignment and synteny plots☆31Updated 2 years ago
- A box of genomics tools☆21Updated 5 years ago
- Infer demographic history with the Moran model☆48Updated 2 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- ☆26Updated 6 months ago