chilleo / ALPHA
A toolkit for automated local phylogenomic analyses, or ALPHA
☆12Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for ALPHA
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆11Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆32Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆44Updated 5 years ago
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆25Updated 3 weeks ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago
- Convergent substitution detection tool based on the PCOC model☆29Updated 2 years ago
- General purpose population genetics software☆12Updated 5 years ago
- ☆21Updated 10 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- ☆24Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆46Updated last year
- Likelihood-based Selective Sweep Detection☆35Updated last year
- Compute N50/NG50 and auN/auNG☆31Updated last year
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated last month
- A massively parallel tool for model selection and tree inference on thousands of genes☆42Updated 8 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated this week
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 5 months ago
- HyPhy standalone analyses☆39Updated last week
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 2 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆51Updated last year
- ☆32Updated 3 years ago
- ☆38Updated last year
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- ☆39Updated 2 years ago
- ☆24Updated 7 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆23Updated 4 months ago