Alternatives and similar repositories for alphafold-notebooks

Users that are interested in alphafold-notebooks are comparing it to the libraries listed below

• idlutz / protein-backbone-MCTS
  ☆52Updated last year
• hiranumn / DeepAccNet
  Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.
  ☆89Updated 4 years ago
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆81Updated 2 years ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆54Updated 3 years ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• Graylab / deepH3-distances-orientations
  ☆35Updated 4 years ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• dahjan / DMS_opt
  ☆74Updated 5 years ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆50Updated 3 years ago
• tommyhuangthu / UniDesign
  Universal framework for physically based computational protein design
  ☆37Updated 2 years ago
• FTD007 / PInet
  ☆25Updated 3 years ago
• Liuxg16 / GeoPPI
  ☆90Updated 3 years ago
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 4 years ago
• jcchan23 / GraphSol
  Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted cont…
  ☆76Updated 3 years ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆61Updated this week
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆56Updated 6 months ago
• Furman-Lab / PatchMAN
  ☆27Updated last month
• jproney / AF2Rank
  ☆114Updated 3 years ago
• bjornwallner / alphafoldv2.2.0
  Open source code for AlphaFold.
  ☆38Updated 3 years ago
• zhenglz / onionnet
  A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction
  ☆83Updated 5 years ago
• sarisabban / RosettaDesign
  RosettaDesign using PyRosetta
  ☆33Updated 6 years ago
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆75Updated 5 years ago
• luoyunan / ECNet
  An evolutionary context-integrated deep learning framework for protein engineering
  ☆67Updated 3 years ago
• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆41Updated 4 years ago
• sarisabban / RamaNet
  Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
  ☆52Updated 10 months ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆98Updated 2 years ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆25Updated 2 years ago
• nekitmm / DLPacker
  DLPacker
  ☆32Updated last year
• ChakradharG / PeptideBERT
  Transformer Based Language Model for Peptide Property Prediction
  ☆48Updated last year
• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆37Updated 2 years ago