ShintaroMinami / GCNdesign
Neural network model for prediction of amino-acid sequence from a protein backbone structure
☆24Updated 2 months ago
Alternatives and similar repositories for GCNdesign
Users that are interested in GCNdesign are comparing it to the libraries listed below
Sorting:
- PaCS-Toolkit: Optimized software utilities for PaCS-MD and following analysis☆18Updated last month
- Making Protein folding accessible to all!☆22Updated last year
- Quantitative Estimate Index for Early-Stage Screening of Compounds Targeting Protein-Protein Interactions☆18Updated last year
- Modelling protein conformational landscape with Alphafold☆48Updated this week
- ☆16Updated 8 months ago
- ☆34Updated 6 months ago
- Benchmarking code accompanying the release of `bioemu`☆26Updated 2 weeks ago
- ☆37Updated last year
- ☆19Updated 2 years ago
- ☆49Updated last month
- code for IDR binding paper 2025☆18Updated 3 months ago
- Dashboard for LLM Drug Discovery Challenge.☆13Updated last year
- ☆32Updated last year
- Efficient manipulation of protein structures in Python☆54Updated 6 months ago
- Extract the PAE & pLDDT value of Alphafold2 from .pkl to .png, .csv & .pdb file.☆22Updated 3 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆37Updated last month
- ☆21Updated 2 years ago
- Python based Graphical User Interface for generating input files for and running molecular dynamic simulation.☆10Updated 8 months ago
- Improving protein–ligand docking and screening accuracies by incorporating a scoring function correction term☆27Updated 5 months ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆17Updated last year
- protein structure generation with sparse all-atom denoising models☆31Updated 3 weeks ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆26Updated 3 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- ☆35Updated last year
- Extension of ThermoMPNN for double mutant predictions☆33Updated 2 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆18Updated 5 months ago
- Modelling of Large Protein Complexes☆37Updated last year
- Scores for Hydrophobicity and Charges based on SASAs☆31Updated last month