Neural network model for prediction of amino-acid sequence from a protein backbone structure
☆25Mar 5, 2025Updated last year
Alternatives and similar repositories for GCNdesign
Users that are interested in GCNdesign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Mar 13, 2024Updated 2 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- ☆19Oct 4, 2022Updated 3 years ago
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 7 years ago
- ☆12Mar 12, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆13Dec 29, 2020Updated 5 years ago
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆20Jan 17, 2024Updated 2 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆17May 2, 2021Updated 5 years ago
- Bayesian Optimization with Pretrained Protein Sequence Models☆56Jul 27, 2024Updated 2 years ago
- protein docking stuff☆57Apr 2, 2026Updated 4 months ago
- ☆18Dec 22, 2017Updated 8 years ago
- This repository enables inference and sampling for Dyno Psi-1, a de novo miniprotein binder design model.☆24Mar 24, 2026Updated 4 months ago
- Building more accurate protein structures from backbone torsion angles☆16Mar 21, 2025Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Aug 10, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 5 years ago
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated last year
- a pytorch version for GREMLIN, used to predict the protein contacts by coevolution method.☆17May 30, 2021Updated 5 years ago
- ☆46Jan 10, 2024Updated 2 years ago
- PyMOL-wasm port's binary and html/javascript code☆37Sep 15, 2025Updated 10 months ago
- ☆15Nov 20, 2024Updated last year