ShintaroMinami / GCNdesignLinks
Neural network model for prediction of amino-acid sequence from a protein backbone structure
☆24Updated 3 months ago
Alternatives and similar repositories for GCNdesign
Users that are interested in GCNdesign are comparing it to the libraries listed below
Sorting:
- code for IDR binding paper 2025☆18Updated 4 months ago
- Efficient manipulation of protein structures in Python☆54Updated 7 months ago
- ☆50Updated last week
- Quantitative Estimate Index for Early-Stage Screening of Compounds Targeting Protein-Protein Interactions☆18Updated last year
- protein structure generation with sparse all-atom denoising models☆32Updated 3 weeks ago
- Modelling protein conformational landscape with Alphafold☆51Updated this week
- ☆16Updated 10 months ago
- Making Protein folding accessible to all!☆22Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆17Updated last year
- ☆32Updated last year
- Improving protein–ligand docking and screening accuracies by incorporating a scoring function correction term☆28Updated 6 months ago
- ☆21Updated 2 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated last year
- Modelling of Large Protein Complexes☆37Updated last year
- ☆40Updated last year
- PaCS-Toolkit: Optimized software utilities for PaCS-MD and following analysis☆19Updated 3 months ago
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆19Updated last year
- Extension of ThermoMPNN for double mutant predictions☆33Updated 3 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆37Updated 2 months ago
- Some scripts that I keep using over and over.☆19Updated 6 months ago
- Software package for FEP☆18Updated 11 months ago
- ☆35Updated 7 months ago
- MMGX: Multiple Molecular Graph eXplainable Discovery☆18Updated last week
- ☆35Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆49Updated last month
- Benchmarking code accompanying the release of `bioemu`☆32Updated last week
- predict stability change upon mutation☆28Updated last year
- HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer☆25Updated 11 months ago
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆21Updated 3 months ago