GitHub repository for "Leveraging Implicit Knowledge in Neural Networks for Functional Dissection and Engineering of Proteins"
☆18Mar 31, 2019Updated 7 years ago
Alternatives and similar repositories for DeeProtein
Users that are interested in DeeProtein are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The AiGEM software suite of Team Heidelberg 2017☆15Apr 17, 2018Updated 8 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆17May 2, 2021Updated 5 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆22Jul 20, 2023Updated 3 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Embeddings to Network Alignment - align biological networks between two species☆10Sep 8, 2023Updated 2 years ago
- CADEE: Computer-Aided Directed Evolution of Enzymes☆18Nov 7, 2023Updated 2 years ago
- ☆19Oct 4, 2022Updated 3 years ago
- ☆30Apr 2, 2026Updated 5 months ago
- A C, C++, Python project focusing on Docking analysis, Source code, Blogs, Data availability, References.☆28Aug 17, 2026Updated 2 weeks ago
- Dimensionful types for Nim.☆20Aug 7, 2018Updated 8 years ago
- Micro DNA identification☆24Aug 5, 2021Updated 5 years ago
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 5 years ago
- Functions and classes for doing Gaussian process models of proteins☆11Apr 13, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A standardized protein design benchmark for motif-scaffolding problems☆84Updated this week
- ☆15Aug 16, 2025Updated last year
- This is an official implementation for "MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins".☆19Jan 4, 2025Updated last year
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 4 years ago
- ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning☆11Jul 6, 2023Updated 3 years ago
- Neural networks to model BCR affinity maturation☆19May 11, 2026Updated 3 months ago
- Generate rust command line executables from gRPC protobuf services.☆11Aug 27, 2022Updated 4 years ago
- WhatsCloud is an android app which allows you to analyze your WhatsApp chat history on the fly with only one click☆12Jul 29, 2019Updated 7 years ago
- ☆15Jan 10, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15May 7, 2019Updated 7 years ago
- Universal framework for physically based computational protein design☆36Aug 19, 2023Updated 3 years ago
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25May 13, 2020Updated 6 years ago
- Learntime helps students remember what they've learned using AI-guided active recall and spaced repetition.☆15Nov 26, 2024Updated last year
- This is like Inverting Binary Tree, but instead of a Binary Tree it's a File Tree.☆12Apr 21, 2021Updated 5 years ago
- Protein Sequence Evolutionary Information Language Model☆14Oct 5, 2023Updated 2 years ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Updated this week
- PyPEF – Pythonic Protein Engineering Framework☆16Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆11Apr 25, 2021Updated 5 years ago
- ☆10Apr 1, 2024Updated 2 years ago
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆20Jan 5, 2018Updated 8 years ago
- Variational Autoencoder with non-euclidean (hyperbolic) latent space☆14Nov 25, 2022Updated 3 years ago
- This repository contains a Telegram bot written in Python and integrated with the ChatGPT API. It allows users to interact with a virtua…☆10Mar 4, 2023Updated 3 years ago
- An abstract tree data-structure to represent windows as leaf nodes.☆12Dec 25, 2022Updated 3 years ago
- Gaussian process models for optimizing channelrhodopsin properties.☆13May 30, 2020Updated 6 years ago