GitHub repository for "Leveraging Implicit Knowledge in Neural Networks for Functional Dissection and Engineering of Proteins"
☆18Mar 31, 2019Updated 7 years ago
Alternatives and similar repositories for DeeProtein
Users that are interested in DeeProtein are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The AiGEM software suite of Team Heidelberg 2017☆15Apr 17, 2018Updated 8 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆17May 2, 2021Updated 5 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆22Jul 20, 2023Updated 3 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Embeddings to Network Alignment - align biological networks between two species☆10Sep 8, 2023Updated 3 years ago
- CADEE: Computer-Aided Directed Evolution of Enzymes☆18Nov 7, 2023Updated 2 years ago
- Team Heidelberg's new and sharksome software.☆13Sep 19, 2015Updated 11 years ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- ☆19Oct 4, 2022Updated 4 years ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 11 months ago
- Pretrained METL models with minimal dependencies☆16Sep 16, 2026Updated 3 weeks ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- ☆30Apr 2, 2026Updated 6 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Fine-tune AlphaFold 3, AlphaFold 2, Boltz-1, and Boltz-2 on downstream protein tasks. Algorithm notebooks and papers are the supporting l…☆29Updated this week
- Dimensionful types for Nim.☆20Aug 7, 2018Updated 8 years ago
- Micro DNA identification☆24Aug 5, 2021Updated 5 years ago
- Decoding the functional networks of non-model organisms☆13Aug 12, 2026Updated 2 months ago
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 5 years ago
- Functions and classes for doing Gaussian process models of proteins☆11Apr 13, 2018Updated 8 years ago
- A standardized protein design benchmark for motif-scaffolding problems☆84Aug 27, 2026Updated last month
- ☆16Aug 16, 2025Updated last year
- This is an official implementation for "MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins".☆19Jan 4, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- High-throughput framework for running molecular simulations for METL☆22Sep 18, 2025Updated last year
- ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning☆11Jul 6, 2023Updated 3 years ago
- Neural networks to model BCR affinity maturation☆20May 11, 2026Updated 5 months ago
- WhatsCloud is an android app which allows you to analyze your WhatsApp chat history on the fly with only one click☆12Jul 29, 2019Updated 7 years ago
- Recommender system for detecting complementary products based on products' textual attributes using Siamese Neural Networks. This code is…☆14Aug 21, 2020Updated 6 years ago
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 6 years ago
- Universal framework for physically based computational protein design☆36Sep 9, 2026Updated last month
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25May 13, 2020Updated 6 years ago
- Learntime helps students remember what they've learned using AI-guided active recall and spaced repetition.☆15Nov 26, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆16Apr 3, 2025Updated last year
- Protein Sequence Evolutionary Information Language Model☆14Oct 5, 2023Updated 3 years ago
- PyPEF – Pythonic Protein Engineering Framework☆17Updated this week
- Official repository for discrete Walk-Jump Sampling (dWJS)☆59Dec 17, 2023Updated 2 years ago
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆35Feb 23, 2021Updated 5 years ago
- Recommendation system for 3 color palettes using neural networks☆16Jan 6, 2020Updated 6 years ago
- ☆10Mar 8, 2024Updated 2 years ago