juzb / DeeProtein

Related projects ⓘ

Alternatives and complementary repositories for DeeProtein

• tadorfer / protlearn
  A Python package for extracting protein sequence features
  ☆58Updated 2 years ago
• ba-lab / pdnet
  PDNET: A fully open-source framework for deep learning protein real-valued distances
  ☆34Updated 3 years ago
• eliberis / parapred
  Paratope Prediction using Deep Learning
  ☆59Updated last year
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆71Updated 6 months ago
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆58Updated last year
• yarongef / DistilProtBert
  DistilProtBert implementation, a distilled version of ProtBert model.
  ☆15Updated 2 years ago
• Graylab / deepH3-distances-orientations
  ☆34Updated 3 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆56Updated 3 years ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆22Updated 3 years ago
• jhmlam / NucleicNet
  ☆35Updated 2 years ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆22Updated 8 months ago
• alchemab / parapred-pytorch
  PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
  ☆18Updated last year
• vkola-lab / peds2019
  Quantifying the nativeness of antibody sequences using long short-term memory networks
  ☆16Updated 2 years ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆51Updated this week
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆72Updated 3 years ago
• zswitten / Antimicrobial-Peptides
  Collecting AMP MIC data from different sources, then running a GAN to output promising sequences
  ☆65Updated 3 months ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆34Updated 4 years ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆47Updated 2 weeks ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆54Updated 3 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆83Updated last year
• sirimullalab / DLSCORE
  DLSCORE: A deep learning based scoring function for predicting protein-ligand binding affinity
  ☆49Updated last year
• oxpig / saab_plus
  ☆24Updated 4 years ago
• PDBeurope / pdbe-api-training
  Interactive Python notebooks for PDBe API training
  ☆45Updated last week
• RosettaCommons / Rosetta-DL
  A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
  ☆32Updated 2 years ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆54Updated last year
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 5 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆49Updated 3 months ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆128Updated last year
• rs239 / abmap
  Protein language model customized for antibodies
  ☆63Updated 5 months ago