GitHub repository for "Leveraging Implicit Knowledge in Neural Networks for Functional Dissection and Engineering of Proteins"
☆18Mar 31, 2019Updated 7 years ago
Alternatives and similar repositories for DeeProtein
Users that are interested in DeeProtein are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Supporting tools for PyTorch in biology research.☆19Mar 10, 2022Updated 4 years ago
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 5 years ago
- Pretrained METL models with minimal dependencies☆18Sep 16, 2026Updated last month
- The AiGEM software suite of Team Heidelberg 2017☆15Apr 17, 2018Updated 8 years ago
- ☆11Feb 3, 2026Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆18Mar 13, 2024Updated 2 years ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- High-throughput framework for running molecular simulations for METL☆23Sep 18, 2025Updated last year
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆13Dec 10, 2024Updated last year
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆17May 2, 2021Updated 5 years ago
- Code for RL-DIF☆16Jun 24, 2025Updated last year
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 5 years ago
- Team Heidelberg's new and sharksome software.☆13Sep 19, 2015Updated 11 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆21Jul 20, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CADEE: Computer-Aided Directed Evolution of Enzymes☆17Nov 7, 2023Updated 2 years ago
- Embeddings to Network Alignment - align biological networks between two species☆10Sep 8, 2023Updated 3 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆59Dec 17, 2023Updated 2 years ago
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- ☆19Oct 4, 2022Updated 4 years ago
- AssayBench: An Assay-Level Virtual Cell Benchmark for LLMs and Agents☆18Sep 30, 2026Updated last month
- Protein representation and design under a single training scheme☆25May 17, 2026Updated 5 months ago
- Protein Language Modeling beyond static folds reveals sequence-encoded flexibility☆37Feb 1, 2026Updated 9 months ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆23Jul 4, 2021Updated 5 years ago
- ☆30Apr 2, 2026Updated 6 months ago
- Dimensionful types for Nim.☆20Aug 7, 2018Updated 8 years ago
- Fine-tune AlphaFold 3, AlphaFold 2, Boltz-1, and Boltz-2 on downstream protein tasks. Algorithm notebooks and papers are the supporting l…☆30Oct 9, 2026Updated 3 weeks ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 11 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆37Dec 8, 2025Updated 10 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆83Aug 27, 2026Updated 2 months ago
- ☆28Oct 21, 2022Updated 4 years ago
- ☆33Dec 12, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A smart question-answering system for Persian documents using Retrieval Augmented Generation (RAG)☆15Aug 10, 2025Updated last year
- 📝基于 Vue、Vditor，所构建的在线 Markdown 编辑器，支持流程图、甘特图、时序图、任务列表、HTML 自动转换为 Markdown 等功能；🎉新增「所见即所得」编辑模式。☆11Oct 20, 2022Updated 4 years ago
- Derivative-Free Guidance in Diffusion Models with Soft Value-Based Decoding. For controlled generation in DNA, RNA, proteins, molecules (…☆41Jan 7, 2026Updated 9 months ago
- A database of opsin genotype-phenotype data and machine-learning models trained to predict opsin phenotypes.☆10Sep 9, 2026Updated last month
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Aug 10, 2023Updated 3 years ago
- Decoding the functional networks of non-model organisms☆13Aug 12, 2026Updated 2 months ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 4 years ago