oxpig / dlab-public
Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"
☆30Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for dlab-public
- Tool for modelling the CDRs of antibodies☆45Updated last year
- ☆43Updated last year
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆33Updated last year
- AlphaFold-initiated replica exchange protein docking☆45Updated 3 months ago
- ☆34Updated 3 years ago
- Making Protein folding accessible to all!☆18Updated 10 months ago
- Code for the antibody deep learning paper.☆14Updated 2 years ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆23Updated 4 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆22Updated 8 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆25Updated 10 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆20Updated 4 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆25Updated 5 months ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆51Updated 2 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- ☆67Updated 4 years ago
- ☆20Updated 2 years ago
- Machine learning models for antibody sequences in PyTorch☆38Updated 3 years ago
- Quantifying the nativeness of antibody sequences using long short-term memory networks☆16Updated 2 years ago
- ☆35Updated 10 months ago
- PyDock Tutorial☆30Updated 6 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆29Updated last year
- ☆26Updated 11 months ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆18Updated last year
- Antibody-specific masked language model☆36Updated last year
- Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide☆21Updated last year
- PyPEF – Pythonic Protein Engineering Framework☆22Updated 2 weeks ago
- Public repository describing training and testing of AntiBERTa.☆54Updated last year
- Repo contains source code of the SurfaceID paper☆15Updated 8 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆25Updated last month
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆32Updated 2 years ago