oxpig / dlab-publicLinks
Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"
☆31Updated 3 years ago
Alternatives and similar repositories for dlab-public
Users that are interested in dlab-public are comparing it to the libraries listed below
Sorting:
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- ☆51Updated 2 years ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆49Updated last year
- ☆73Updated 5 years ago
- Making Protein folding accessible to all!☆25Updated last year
- Code for the antibody deep learning paper.☆16Updated 3 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆54Updated 3 years ago
- ☆35Updated 4 years ago
- ☆47Updated 11 months ago
- ☆41Updated last year
- PyPEF – Pythonic Protein Engineering Framework☆24Updated 3 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- Scores for Hydrophobicity and Charges based on SASAs☆40Updated 6 months ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆36Updated 3 years ago
- Efficient manipulation of protein structures in Python☆60Updated 3 months ago
- Physical energy function for protein sequence design☆34Updated 2 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Updated 3 weeks ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 4 years ago
- Universal framework for physically based computational protein design☆36Updated 2 years ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆28Updated 3 years ago
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆47Updated 2 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 7 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Updated 2 years ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆76Updated 2 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago
- ☆21Updated last year
- AlphaFold-initiated replica exchange protein docking☆86Updated 6 months ago