oxpig / dlab-publicLinks
Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"
☆31Updated 3 years ago
Alternatives and similar repositories for dlab-public
Users that are interested in dlab-public are comparing it to the libraries listed below
Sorting:
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- Tool for modelling the CDRs of antibodies☆50Updated 3 years ago
- ☆51Updated 2 years ago
- ☆74Updated 5 years ago
- Code for the antibody deep learning paper.☆16Updated 3 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆50Updated last year
- ☆35Updated 4 years ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆44Updated 3 years ago
- An antibody-specific language model focusing on NGL prediction☆34Updated last year
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆54Updated 3 years ago
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆31Updated last year
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆37Updated 3 years ago
- ☆47Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆56Updated 6 months ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆28Updated 3 years ago
- Machine learning-driven antibody design☆63Updated 2 years ago
- Quantifying the nativeness of antibody sequences using long short-term memory networks☆18Updated 4 years ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆42Updated last year
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 4 years ago
- Physical energy function for protein sequence design☆36Updated 2 years ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- Making Protein folding accessible to all!☆25Updated 2 years ago
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago
- Antibody Binding Mutational Database☆39Updated 6 years ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆57Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆77Updated 2 months ago
- ☆21Updated 3 years ago