sdaberdaku / AntibodyInterfacePredictionLinks
software used in paper "Antibody interface prediction with 3D Zernike descriptors and SVM"
☆13Updated 4 years ago
Alternatives and similar repositories for AntibodyInterfacePrediction
Users that are interested in AntibodyInterfacePrediction are comparing it to the libraries listed below
Sorting:
- Docking benchmark 5 - cleaned and ready to use for HADDOCK☆14Updated 3 weeks ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 4 years ago
- De novo design of small molecule binding sites into proteins☆12Updated 4 years ago
- This script can clean up the disordered region in the AlphaFold DB structures to adapt it to the molecular docking, extract the sequence …☆14Updated 2 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Updated 6 years ago
- ☆27Updated 2 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆35Updated 2 years ago
- Some scripts that I keep using over and over.☆21Updated 5 months ago
- Tutorial files☆12Updated last year
- ☆23Updated 6 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆42Updated last year
- Protein-protein binding affinity benchmark☆16Updated 9 months ago
- ☆20Updated 3 years ago
- ☆23Updated 4 years ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆27Updated 4 years ago
- Scores for Hydrophobicity and Charges based on SASAs☆40Updated 6 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆29Updated last year
- ☆25Updated 3 years ago
- ☆29Updated 5 years ago
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Updated 2 years ago
- A program fror inter-protein contact prediction from structures of interacting proteins☆19Updated last year
- Scoring methods for predicting the DDG upon protein mutation☆16Updated 2 years ago
- ☆26Updated 3 months ago
- Repository of all EJP lab computational projects☆14Updated last week
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆32Updated last week
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Physical energy function for protein sequence design☆34Updated 2 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 5 months ago
- A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design☆19Updated 10 months ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆24Updated 6 months ago