Kortemme-Lab / protein_feature_analysisLinks
ProteinFeatureAnalyzer extracts, analyzes and visualizes features from protein structures.
☆12Updated 5 years ago
Alternatives and similar repositories for protein_feature_analysis
Users that are interested in protein_feature_analysis are comparing it to the libraries listed below
Sorting:
- ☆15Updated last month
- ☆28Updated last year
- De novo design of small molecule binding sites into proteins☆12Updated 4 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Updated 6 years ago
- Convert coarse-grained protein structure to all-atom model☆42Updated 2 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆19Updated 5 months ago
- ☆33Updated 2 years ago
- Tools to build coarse grained models and perform simulations with OpenMM☆24Updated 2 years ago
- ☆68Updated last year
- Cryptic pocket prediction using AlphaFold 2☆24Updated 2 years ago
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆11Updated 4 years ago
- This script makes a cyclic peptide or cyclic nucleotide topology file for GROMACS out of (specially prepared) linear molecule topology fi…☆13Updated 4 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- Binding pocket optimization based on force fields and docking scoring functions☆34Updated 5 months ago
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆23Updated last year
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆57Updated 3 weeks ago
- Some scripts that I keep using over and over.☆19Updated last month
- DLPacker☆31Updated last year
- ☆15Updated 4 years ago
- Benchmarking code accompanying the release of `bioemu`☆41Updated last month
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Updated 2 years ago
- Building more accurate protein structures from backbone torsion angles☆14Updated 5 months ago
- ☆13Updated last year
- ☆16Updated 8 months ago
- ☆20Updated 2 years ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 6 months ago
- ☆37Updated 2 weeks ago
- ☆32Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- Modelling protein conformational landscape with Alphafold☆51Updated this week