Graylab / deepH3-distances-orientationsLinks
☆35Updated 3 years ago
Alternatives and similar repositories for deepH3-distances-orientations
Users that are interested in deepH3-distances-orientations are comparing it to the libraries listed below
Sorting:
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 2 years ago
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 3 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆43Updated last month
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆35Updated 2 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆89Updated 4 years ago
- ☆110Updated 2 years ago
- Physical energy function for protein sequence design☆32Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Updated 5 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 4 years ago
- ☆47Updated last year
- Bioinformatics and Cheminformatics protocols for peptide analysis☆42Updated 2 years ago
- A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction☆81Updated 4 years ago
- ☆29Updated 5 years ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆48Updated last year
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆60Updated 4 years ago
- Antibody Binding Mutational Database☆33Updated 6 years ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆28Updated 2 years ago
- ☆85Updated 10 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆63Updated 3 weeks ago
- Tool for modelling the CDRs of antibodies☆32Updated 2 years ago
- ☆20Updated last year
- ☆70Updated 4 years ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆44Updated 2 years ago
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆34Updated 3 weeks ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆25Updated last year
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- ☆70Updated 4 months ago