Wang-Lin-boop / AlphaFoldDB_ProcessingLinks
This script can clean up the disordered region in the AlphaFold DB structures to adapt it to the molecular docking, extract the sequence of the disordered region to make it available for sequence motif searching.
☆14Updated 2 years ago
Alternatives and similar repositories for AlphaFoldDB_Processing
Users that are interested in AlphaFoldDB_Processing are comparing it to the libraries listed below
Sorting:
- Making Protein folding accessible to all!☆22Updated last year
- PepFun 2.0: improved protocols for the analysis of natural and modified peptides☆22Updated last year
- An accurate and efficient protein sequence design approach☆24Updated 3 months ago
- Kuhlman Lab Installation of AlphaFold3☆26Updated last month
- ML-optimized library design with improved fitness and diversity for protein engineering☆35Updated 10 months ago
- Explicit crosslinks in AlphaFold 3☆22Updated 3 months ago
- ☆26Updated last month
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆26Updated 3 years ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆15Updated 3 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆56Updated last month
- Some Rosetta Scripts that allow for various simple tasks☆14Updated 5 years ago
- ☆22Updated last month
- ☆15Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆23Updated last year
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆23Updated last month
- ☆27Updated 2 months ago
- ☆29Updated 10 months ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆11Updated 4 years ago
- PPI version of Pythia☆12Updated 7 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆27Updated this week
- ☆43Updated 9 months ago
- Physical energy function for protein sequence design☆30Updated 2 years ago
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆59Updated 2 months ago
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆8Updated last year
- ☆33Updated last year
- scripts to find PBD structures for cancer driver proteins☆31Updated 4 months ago
- bakerlab pymol scripts☆23Updated 5 years ago
- Material to run the HADDOCK antibody-antigen modelling protocol☆22Updated last year
- ☆20Updated last month