Wang-Lin-boop / AlphaFoldDB_ProcessingLinks
This script can clean up the disordered region in the AlphaFold DB structures to adapt it to the molecular docking, extract the sequence of the disordered region to make it available for sequence motif searching.
☆14Updated 2 years ago
Alternatives and similar repositories for AlphaFoldDB_Processing
Users that are interested in AlphaFoldDB_Processing are comparing it to the libraries listed below
Sorting:
- De novo design of small molecule binding sites into proteins☆12Updated 4 years ago
- Some Rosetta Scripts that allow for various simple tasks☆14Updated 6 years ago
- software used in paper "Antibody interface prediction with 3D Zernike descriptors and SVM"☆13Updated 4 years ago
- ☆27Updated last month
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆27Updated 4 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Updated 6 years ago
- ☆20Updated 3 years ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆28Updated 2 years ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆27Updated 8 months ago
- ☆17Updated last year
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆50Updated last year
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 4 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆54Updated 3 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆16Updated 4 years ago
- Making Protein folding accessible to all!☆25Updated 2 years ago
- Scores for Hydrophobicity and Charges based on SASAs☆41Updated 7 months ago
- Scoring methods for predicting the DDG upon protein mutation☆16Updated 2 years ago
- ☆21Updated last year
- iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machi…☆31Updated 3 years ago
- ☆23Updated 4 years ago
- ☆15Updated last year
- Material to run the HADDOCK antibody-antigen modelling protocol☆23Updated 4 months ago
- ☆24Updated 8 months ago
- Explicit crosslinks in AlphaFold 3☆23Updated 10 months ago
- Repository of all EJP lab computational projects☆15Updated last month
- Some scripts that I keep using over and over.☆21Updated 6 months ago
- An accurate and efficient protein sequence design approach☆27Updated 10 months ago
- Binding pocket optimization based on force fields and docking scoring functions☆37Updated 10 months ago
- ☆15Updated 4 years ago
- ☆13Updated 8 years ago