biomed-AI / GraphSiteLinks
GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
☆61Updated last year
Alternatives and similar repositories for GraphSite
Users that are interested in GraphSite are comparing it to the libraries listed below
Sorting:
- ☆74Updated 5 years ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆115Updated 6 months ago
- Protein language model trained on coding DNA☆53Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆108Updated 3 weeks ago
- ☆91Updated 3 years ago
- ☆77Updated last year
- ☆109Updated 2 years ago
- ☆54Updated last year
- ☆122Updated last year
- Transformer Based Language Model for Peptide Property Prediction☆49Updated last year
- A Python 3 version of the protein descriptor package propy☆48Updated 2 years ago
- ☆76Updated 4 years ago
- Code for our paper "Protein sequence design with a learned potential"☆81Updated 2 years ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆69Updated 5 months ago
- pyFoldX: python bindings for FoldX.☆54Updated 4 years ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆56Updated last year
- DeepAAI☆35Updated last year
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆36Updated 7 months ago
- RNA Multiple Sequence Alignment☆47Updated 2 years ago
- An evolutionary context-integrated deep learning framework for protein engineering☆70Updated 3 years ago
- ☆55Updated last year
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆62Updated 3 weeks ago
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆74Updated last month
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆31Updated last year
- ☆76Updated 2 years ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆91Updated last year
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆71Updated last year