cbg-ethz / SCITELinks
☆24Updated 7 years ago
Alternatives and similar repositories for SCITE
Users that are interested in SCITE are comparing it to the libraries listed below
Sorting:
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆30Updated 10 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 months ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- Lightweight Iterative Gene set Enrichment in R☆58Updated last year
- Exon-exon splice junctions across SRA☆43Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- Cellsnake tool main repo☆36Updated last year
- Single-CELL rna-seq analysis software☆39Updated 8 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Cloud-based single-cell copy-number variation analysis tool☆53Updated 2 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Updated 10 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- An R package for inferring the subclonal architecture of tumors☆121Updated 2 years ago