☆24Oct 15, 2018Updated 7 years ago
Alternatives and similar repositories for SCITE
Users that are interested in SCITE are comparing it to the libraries listed below
Sorting:
- ☆25Mar 3, 2020Updated 6 years ago
- A robust PCA method of tumor clone and evolution inference from single-cell sequencing data.☆12May 28, 2020Updated 5 years ago
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆20Jan 8, 2026Updated 2 months ago
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 9 years ago
- for detecting internal tandem duplication from genome sequence data.☆12May 16, 2019Updated 6 years ago
- ☆16May 13, 2022Updated 3 years ago
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆15Mar 9, 2026Updated 2 weeks ago
- Pipeline for processing of GoT-ChA genotyping data and downstream analysis☆15Mar 17, 2025Updated last year
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Apr 20, 2023Updated 2 years ago
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆10May 10, 2021Updated 4 years ago
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data☆10Jul 25, 2022Updated 3 years ago
- WGS Pipeline☆13Jan 19, 2018Updated 8 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Nov 27, 2024Updated last year
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 3 years ago
- Analysis of co-expression networks from RNA-seq data☆11Apr 6, 2017Updated 8 years ago
- Single-cell COPy number Estimation☆16Dec 11, 2022Updated 3 years ago
- Tertiary analysis package to visualize single-cell data generated by the Tapestri Platform.☆18Mar 4, 2026Updated 2 weeks ago
- ☆34Jun 7, 2019Updated 6 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Apr 11, 2023Updated 2 years ago
- Notes for getting to know the Julia programming language in one day.☆38Feb 19, 2022Updated 4 years ago
- MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation☆21Dec 4, 2024Updated last year
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated last month
- Anatomogram illustrating Expression Atlas experiments☆50Jul 30, 2020Updated 5 years ago
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆22Jul 11, 2024Updated last year
- ☆18Feb 25, 2022Updated 4 years ago
- A front end for elasticsearch written in plotly dash☆10Nov 9, 2023Updated 2 years ago
- deTS☆18Apr 21, 2020Updated 5 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- ☆21Feb 27, 2026Updated 3 weeks ago
- A Linux CPU temperature terminal monitor with history charts.☆13Nov 20, 2015Updated 10 years ago
- Single cell network synthesis toolkit☆23Feb 15, 2021Updated 5 years ago
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆11Feb 27, 2026Updated 3 weeks ago
- Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system☆25Jan 8, 2018Updated 8 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- ☆21Sep 1, 2022Updated 3 years ago
- R package for bcbio single-cell RNA-seq analysis.☆30Sep 9, 2024Updated last year
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35May 14, 2020Updated 5 years ago
- Ordering gene-expression and functional events in single-cell experiments☆29Mar 7, 2026Updated 2 weeks ago