cbg-ethz / SCITE
☆22Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for SCITE
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- XEnograft Visualization & Analysis☆9Updated last year
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆27Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated last month
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆27Updated 9 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆15Updated 2 years ago
- DriverPower☆26Updated 5 months ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆12Updated last year
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆16Updated 6 years ago
- Genomic data interpretation and visualization Workshop☆18Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated 5 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- ☆40Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago