bcgsc / ntCardLinks
Estimating k-mer coverage histogram of genomics data
☆77Updated last year
Alternatives and similar repositories for ntCard
Users that are interested in ntCard are comparing it to the libraries listed below
Sorting:
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated 2 years ago
- De novo genome assembly and multisample variant calling☆113Updated 6 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆54Updated last year
- Pan-Genomic Matching Statistics☆53Updated last year
- UCSC Nanopore☆43Updated 6 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- ☆49Updated 9 months ago
- Genome inference from a population reference graph☆97Updated 4 months ago
- LoFreq Star: Sensitive variant calling from sequencing data☆106Updated 3 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 3 years ago
- Structural Variant Index☆75Updated 8 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 8 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 4 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated last year
- Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)☆41Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- ☆49Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- ☆47Updated 5 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated 9 months ago