bcgsc / ntCardLinks
Estimating k-mer coverage histogram of genomics data
☆76Updated last year
Alternatives and similar repositories for ntCard
Users that are interested in ntCard are comparing it to the libraries listed below
Sorting:
- Genome inference from a population reference graph☆96Updated 6 months ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated 3 weeks ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated 3 weeks ago
- UCSC Nanopore☆43Updated 6 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 5 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆69Updated 11 months ago
- Pan-Genomic Matching Statistics☆53Updated last year
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 6 months ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆46Updated 8 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- alignment to variation graph inducer☆149Updated 3 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 10 months ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆87Updated 7 years ago
- ☆46Updated 5 years ago
- A versatile toolkit for k-mers with taxonomic information☆79Updated last month
- Data from the Human PanGenomics Project☆60Updated 4 years ago