Single-cell COPy number Estimation
☆18Dec 11, 2022Updated 3 years ago
Alternatives and similar repositories for SCOPE
Users that are interested in SCOPE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16May 13, 2022Updated 4 years ago
- ☆25Aug 24, 2025Updated 9 months ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Jan 15, 2020Updated 6 years ago
- Toolkit for single-cell copy number analysis☆35Dec 15, 2025Updated 5 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆43Aug 17, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Allele-Specific Expression by Single-Cell RNA Sequencing☆30Oct 15, 2020Updated 5 years ago
- University of Cambridge PhD thesis☆17Jan 8, 2021Updated 5 years ago
- A normalization and copy number variation calling procedure for whole exome DNA sequencing data.☆11Sep 29, 2019Updated 6 years ago
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆15Apr 7, 2026Updated 2 months ago
- A robust PCA method of tumor clone and evolution inference from single-cell sequencing data.☆12May 28, 2020Updated 6 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Aug 22, 2021Updated 4 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆26Mar 31, 2023Updated 3 years ago
- ☆12Sep 7, 2023Updated 2 years ago
- ☆10Apr 30, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆14May 27, 2025Updated last year
- Tertiary analysis package to visualize single-cell data generated by the Tapestri Platform.☆18May 20, 2026Updated 3 weeks ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆17Feb 6, 2026Updated 4 months ago
- Ordering gene-expression and functional events in single-cell experiments☆32May 31, 2026Updated last week
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- Repository for Short Course: Deep Learning in Omics☆17Jan 13, 2022Updated 4 years ago
- ☆19Dec 15, 2023Updated 2 years ago
- Draw phylogenetic trees of tumor evolution☆86Jul 21, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆22Jul 11, 2024Updated last year
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆13Oct 16, 2025Updated 7 months ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"☆15Sep 10, 2018Updated 7 years ago
- Optimise PCR primer-set grouping for genetics research☆18Jun 3, 2026Updated last week
- ☆14Jul 22, 2025Updated 10 months ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆83Jan 24, 2025Updated last year
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆12Feb 27, 2026Updated 3 months ago
- Code recipe for "Multimodal One-Shot Learning of Speech and Images"☆11Nov 21, 2018Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 3 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 7 years ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Oct 27, 2020Updated 5 years ago
- MicrOSAtellite Instability Classifier☆15Apr 27, 2026Updated last month
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆21Jul 28, 2025Updated 10 months ago
- ☆13May 14, 2019Updated 7 years ago
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year