☆58Jan 4, 2023Updated 3 years ago
Alternatives and similar repositories for UXM_deconv
Users that are interested in UXM_deconv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆199Apr 19, 2026Updated 6 months ago
- ☆60Mar 9, 2022Updated 4 years ago
- BISulfite-seq CUI Toolkit☆29Oct 5, 2026Updated 3 weeks ago
- Read level DNA methylation analysis of bisulfite converted sequencing data☆20Feb 23, 2026Updated 8 months ago
- ☆11Jun 14, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆161Sep 9, 2026Updated last month
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Dec 22, 2023Updated 2 years ago
- ☆25Jan 18, 2022Updated 4 years ago
- ☆26May 10, 2026Updated 5 months ago
- cfDNA cell type of origin estimation☆36Oct 19, 2023Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32May 11, 2026Updated 5 months ago
- ☆15Jun 27, 2025Updated last year
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆22Sep 3, 2026Updated 2 months ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A (mostly) universal methylation extractor for BS-seq experiments.☆181Oct 20, 2026Updated 2 weeks ago
- ☆17May 25, 2026Updated 5 months ago
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 3 years ago
- Devel repository for bsseq☆38Aug 20, 2026Updated 2 months ago
- cfTools is a versatile R package of analyzing cell-free DNA data.☆11Jun 12, 2026Updated 4 months ago
- Code to accompany publication on cell free chromatin immunoprecipitation (cfChIP)☆14Jun 29, 2025Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆35Apr 4, 2025Updated last year
- A comprehensive toolkit for single-cell methylation sequencing data analysis☆34Jan 29, 2026Updated 9 months ago
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆41Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆48Mar 25, 2026Updated 7 months ago
- ☆10Aug 28, 2022Updated 4 years ago
- Complex Disease Epigenomics Group's quality control and analysis pipelines for DNA methylation arrays, SNP arrays, BS-Seq, ATAC-Seq and C…☆11Oct 27, 2026Updated last week
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆20Feb 22, 2022Updated 4 years ago
- ☆10Oct 13, 2026Updated 3 weeks ago
- Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.☆30Updated this week
- ☆13Oct 29, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Nanopore Adaptive Sampling VARiant caller☆15Oct 19, 2026Updated 2 weeks ago
- Calls somatic SNVs, indels, and allelic copy number jointly across multiple samples from the same patient. These can be standard tumor/n…☆10Oct 29, 2020Updated 6 years ago
- Find CNVs in single cell sequencing data.☆22Apr 4, 2026Updated 7 months ago
- DMR Identification Tool☆35Jul 6, 2023Updated 3 years ago
- ☆34Jul 7, 2026Updated 3 months ago
- ☆15Jan 18, 2023Updated 3 years ago
- ☆27Dec 18, 2024Updated last year