califano-lab / ARACNe-AP
Network Reverse Engineering through AP inference of Mutual Information
☆83Updated last year
Alternatives and similar repositories for ARACNe-AP:
Users that are interested in ARACNe-AP are comparing it to the libraries listed below
- R script for the covid balf data analysis☆65Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆67Updated 5 years ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 5 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Single-Cell Clustering Assessment Framework☆99Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 8 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆101Updated 5 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆63Updated last month
- A tool that allows to get UMI counts from a single cell protein assay☆80Updated 7 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆89Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆99Updated last month
- ☆59Updated 5 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆71Updated 5 months ago
- Tools for single-cell data processing☆122Updated 9 months ago
- A docker image for single-cell analysis☆81Updated last month
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆106Updated 4 months ago
- Single-cell disease relevance score (scDRS)☆120Updated 4 months ago
- ☆60Updated 4 years ago
- ☆61Updated last year
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- Geometry-preserving random sampling☆79Updated 4 months ago
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆81Updated 4 months ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆68Updated last month
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago