howrigan / array_CNV_analysisLinks
Example R scripts to run burden and association analysis on array CNV data
☆14Updated 8 years ago
Alternatives and similar repositories for array_CNV_analysis
Users that are interested in array_CNV_analysis are comparing it to the libraries listed below
Sorting:
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 2 months ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Updated 2 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- ☆13Updated 2 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- An accurate and efficient HLA imputation method.☆25Updated 2 years ago
- ☆23Updated last year
- GTEx analysis scripts☆20Updated 8 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- ☆40Updated 7 years ago
- WGS Pipeline☆13Updated 7 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 2 months ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Script used to identify de novo variants from sequencing data.☆12Updated 8 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 6 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆23Updated 6 months ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆29Updated 6 months ago
- A Toolset for Chromosome X-Wide Association Studies☆10Updated 7 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- Rocking R at UMCCR☆9Updated 4 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- ☆20Updated last year
- An R package for predicting HR deficiency from mutation contexts☆28Updated 3 months ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- ☆13Updated 2 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 10 months ago
- ☆13Updated 7 years ago