howrigan / array_CNV_analysisLinks
Example R scripts to run burden and association analysis on array CNV data
☆14Updated 9 years ago
Alternatives and similar repositories for array_CNV_analysis
Users that are interested in array_CNV_analysis are comparing it to the libraries listed below
Sorting:
- A tool to plot significant regions of GWAS☆29Updated 3 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- ☆25Updated 7 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- ☆63Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆36Updated 6 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- ☆22Updated 2 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 8 years ago
- ☆40Updated 8 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- Cross-population fine-mapping☆41Updated last year
- GTEx analysis scripts☆20Updated 8 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Updated 3 years ago
- ☆39Updated 4 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆27Updated last year
- WGS Pipeline☆13Updated 8 years ago
- An accurate and efficient HLA imputation method.☆27Updated 2 years ago
- A framework to infer mutational signatures in cancer over time☆56Updated 6 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Easy Copy Number !☆21Updated 5 months ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- ☆22Updated 2 months ago
- A Toolset for Chromosome X-Wide Association Studies☆12Updated 7 years ago
- Fast, integrative fine mapping with functional data☆61Updated 6 years ago
- Script used to identify de novo variants from sequencing data.☆11Updated 8 years ago
- Source code of FUMA GWAS web application☆59Updated 2 years ago