Alternatives and similar repositories for BEAR:

Users that are interested in BEAR are comparing it to the libraries listed below

• chrisquince / DESMAN
  De novo Extraction of Strains from MetAgeNomes
  ☆68Updated 4 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• rpetit3 / fastq-scan
  Output FASTQ summary statistics in JSON format
  ☆29Updated 2 years ago
• kdm9 / axe
  Rapid competitive read demulitplexer. Made with tries.
  ☆23Updated last year
• tseemann / seeka
  Get microbial sequence data easier and faster
  ☆28Updated 5 years ago
• pirovc / metameta
  ☆23Updated 5 years ago
• eclarke / komplexity
  A method of assessing sequence complexity based on kmer frequencies
  ☆31Updated 6 years ago
• snacktavish / TreeToReads
  Pipeline to generate NGS reads from a phylogeny
  ☆39Updated 2 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• ibest / ARC
  Assembly by Reduced Complexity (ARC)
  ☆41Updated 9 years ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• HKU-BAL / MegaPath-Nano
  MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…
  ☆14Updated 2 years ago
• WGS-standards-and-analysis / datasets
  Benchmark datasets for WGS analysis
  ☆37Updated 5 years ago
• linsalrob / partie
  PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…
  ☆25Updated 2 years ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆28Updated 2 months ago
• jgurtowski / nanocorr
  Error correction for Oxford Nanopore data
  ☆47Updated 3 years ago
• tseemann / ekidna
  Assembly based core genome SNP alignments for bacteria
  ☆25Updated 5 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last week
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 3 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 7 years ago
• mjsull / Contiguity
  Tool for visualising assemblies.
  ☆17Updated 9 years ago
• hzi-bifo / Haploflow
  ☆29Updated last year
• drpowell / FriPan
  Interactive, web tool for exploring pan-genome of bacterial strains
  ☆45Updated 2 years ago
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆74Updated 8 years ago
• KorfLab / CEGMA_v2
  The final version 2 release of our software to detect core genes in eukaryotic genomes
  ☆28Updated 10 years ago
• pachterlab / metakallisto
  Using kallisto for metagenomic analysis
  ☆50Updated 8 years ago
• SilvioWeging / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated last year
• rrwick / Bacterial-genome-assemblies-with-multiplex-MinION-sequencing
  ☆33Updated 7 years ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated last year