Alternatives and similar repositories for evident

Users that are interested in evident are comparing it to the libraries listed below

• biocore / BIRDMAn
  Bayesian Inferential Regression for Differential Microbiome Analysis
  ☆23Updated last year
• leylabmpi / Struo2
  Scalable creating/updating of metagenome profiling databases
  ☆62Updated 4 months ago
• chrisquince / DESMAN
  De novo Extraction of Strains from MetAgeNomes
  ☆71Updated 5 years ago
• mourisl / centrifuger
  Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.
  ☆75Updated last month
• nick-youngblut / gtdb_to_taxdump
  Convert GTDB taxonomy to NCBI taxdump format
  ☆72Updated 2 years ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆70Updated 11 months ago
• knights-lab / BURST
  An ultrafast optimal aligner for mapping large NGS data to large genome databases.
  ☆57Updated last year
• qiyunzhu / woltka
  Woltka: a versatile meta'omic data classifier
  ☆75Updated 2 months ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆53Updated 3 years ago
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆122Updated last month
• snayfach / MIDAS
  An integrated pipeline for estimating strain-level genomic variation from metagenomic data
  ☆130Updated 2 years ago
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆25Updated last year
• borenstein-lab / burrito
  A visualization tool for exploratory data analysis of metagenomic data
  ☆37Updated 3 years ago
• nickp60 / fcid
  ☆27Updated last month
• cssmillie / StrainFinder
  StrainFinder
  ☆29Updated 7 years ago
• vrmarcelino / CCMetagen
  Microbiome classification pipeline
  ☆65Updated 6 months ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆29Updated 10 months ago
• kaanb93 / q2-krona
  Implementation of Krona to QIIME2
  ☆16Updated last year
• smdabdoub / kraken-biom
  Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…
  ☆56Updated 3 years ago
• qiime2 / q2galaxy
  Generate Galaxy tool descriptions automatically from QIIME 2 actions.
  ☆20Updated 3 weeks ago
• flexidot-bio / flexidot
  Highly customizable, ambiguity-aware dotplots for visual sequence analyses
  ☆93Updated last week
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆59Updated last month
• zhouhj1994 / LinDA
  ☆37Updated last year
• guyleonard / taxdump_edit
  Add new taxa or taxonomic groups to the NCBI Taxdump files
  ☆20Updated 5 years ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆80Updated 2 months ago
• refresh-bio / kmer-db
  Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…
  ☆95Updated 6 months ago
• GATB / dsk
  k-mer counting software
  ☆39Updated 3 years ago
• will-rowe / groot
  A resistome profiler for Graphing Resistance Out Of meTagenomes
  ☆65Updated 5 years ago
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆66Updated 2 years ago
• fbreitwieser / bamcov
  Quickly calculate and visualize sequence coverage in alignment files
  ☆100Updated 6 years ago