Alternatives and similar repositories for evident

Users that are interested in evident are comparing it to the libraries listed below

• biocore / BIRDMAn
  Bayesian Inferential Regression for Differential Microbiome Analysis
  ☆23Updated 2 years ago
• qiyunzhu / woltka
  Woltka: a versatile meta'omic data classifier
  ☆76Updated 5 months ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆71Updated last year
• chrisquince / DESMAN
  De novo Extraction of Strains from MetAgeNomes
  ☆72Updated 5 years ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆53Updated 3 years ago
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆25Updated last week
• nick-youngblut / gtdb_to_taxdump
  Convert GTDB taxonomy to NCBI taxdump format
  ☆74Updated 2 years ago
• leylabmpi / Struo2
  Scalable creating/updating of metagenome profiling databases
  ☆62Updated 7 months ago
• knights-lab / BURST
  An ultrafast optimal aligner for mapping large NGS data to large genome databases.
  ☆57Updated last year
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆37Updated 3 years ago
• biocore / songbird
  Vanilla regression methods for microbiome differential abundance analysis
  ☆60Updated 5 years ago
• christophertbrown / iRep
  scripts for estimating bacteria replication rates based on population genome copy number variation
  ☆73Updated 6 years ago
• snayfach / MIDAS
  An integrated pipeline for estimating strain-level genomic variation from metagenomic data
  ☆132Updated 2 years ago
• FOI-Bioinformatics / flextaxd
  FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…
  ☆67Updated 10 months ago
• xiaoli-dong / metaerg
  ☆42Updated 4 years ago
• caporaso-lab / mockrobiota
  A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
  ☆83Updated 6 years ago
• biocore / redbiom
  Sample search by metadata and features
  ☆47Updated 2 years ago
• Zymo-Research / figaro
  An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
  ☆96Updated last year
• lmrodriguezr / nonpareil
  Estimate metagenomic coverage and sequence diversity
  ☆59Updated last month
• cssmillie / StrainFinder
  StrainFinder
  ☆29Updated 7 years ago
• marbl / MetaCompass
  MetaCompass: Reference-guided Assembly of Metagenomes
  ☆43Updated 5 months ago
• zhouhj1994 / LinDA
  ☆39Updated 2 years ago
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆126Updated last week
• vrmarcelino / CCMetagen
  Microbiome classification pipeline
  ☆65Updated 8 months ago
• GATB / simka
  Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.
  ☆51Updated 4 years ago
• jlw-ecoevo / gRodon
  ☆18Updated 3 years ago
• merenlab / reads-for-assembly
  Simulate metagenomic short reads from one or more populations.
  ☆26Updated last year
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆68Updated 4 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• hzi-bifo / traitar
  From genomes to phenotypes: Traitar, the microbial trait analyzer
  ☆65Updated 6 years ago