biocore / evidentLinks
☆15Updated 2 years ago
Alternatives and similar repositories for evident
Users that are interested in evident are comparing it to the libraries listed below
Sorting:
- Bayesian Inferential Regression for Differential Microbiome Analysis☆23Updated last year
- Woltka: a versatile meta'omic data classifier☆75Updated last month
- Statistical analysis for sparse high-throughput sequencing☆69Updated 10 months ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 4 months ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- seqfu - Sequece Fastx Utilities☆121Updated 3 weeks ago
- Convert GTDB taxonomy to NCBI taxdump format☆73Updated 2 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 6 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆43Updated 2 months ago
- Robust Aitchison PCA from sparse count data☆36Updated 3 years ago
- StrainFinder☆27Updated 7 years ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆71Updated 2 weeks ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆59Updated last month
- ☆37Updated last year
- A visualization tool for exploratory data analysis of metagenomic data☆37Updated 3 years ago
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- Snakemake workflow management system and CLI generation tool☆62Updated last week
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆50Updated 3 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆59Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- ☆32Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- gutSMASH☆55Updated 3 weeks ago
- Microbiome classification pipeline☆65Updated 5 months ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago