biocore / evident
☆13Updated last year
Related projects: ⓘ
- Bayesian Inferential Regression for Differential Microbiome Analysis☆22Updated 9 months ago
- Robust Aitchison PCA from sparse count data☆33Updated 2 years ago
- Implementation of Krona to QIIME2☆14Updated 6 months ago
- ☆17Updated last month
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆30Updated 2 months ago
- Pipeline which removes human DNA from microbial shotgun samples.☆10Updated last month
- Snakemake workflow for comparison of differential abundance ranks☆13Updated 5 months ago
- Scalable creating/updating of metagenome profiling databases☆57Updated last year
- SHallow shOtGUN profiler☆54Updated 2 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 11 months ago
- Generate Galaxy tool descriptions automatically from QIIME 2 actions.☆19Updated 3 months ago
- De novo Extraction of Strains from MetAgeNomes☆69Updated 4 years ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 3 months ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 5 months ago
- StrainFinder☆27Updated 6 years ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated last year
- qiime2 plugin for aldex2 for differential abundance analysis☆10Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 6 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- A versatile toolkit for k-mers with taxonomic information☆74Updated last month
- Auto-parameterizing QC Pipeline for Illumina sequencing runs☆18Updated 2 months ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- ☆28Updated 3 months ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆31Updated last year
- Sparse Cooccurence Network Investigation for Compositional data☆21Updated 2 weeks ago
- Simple bacterial assembly and annotation pipeline☆60Updated this week
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 3 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆44Updated 2 years ago