Alternatives and similar repositories for evident

Users that are interested in evident are comparing it to the libraries listed below

• biocore / BIRDMAn
  Bayesian Inferential Regression for Differential Microbiome Analysis
  ☆23Updated 2 years ago
• leylabmpi / Struo2
  Scalable creating/updating of metagenome profiling databases
  ☆63Updated 7 months ago
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆37Updated 3 years ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆71Updated last year
• qiyunzhu / woltka
  Woltka: a versatile meta'omic data classifier
  ☆76Updated 4 months ago
• chrisquince / DESMAN
  De novo Extraction of Strains from MetAgeNomes
  ☆71Updated 5 years ago
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆25Updated last year
• nick-youngblut / gtdb_to_taxdump
  Convert GTDB taxonomy to NCBI taxdump format
  ☆74Updated 2 years ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆53Updated 3 years ago
• biocore / redbiom
  Sample search by metadata and features
  ☆47Updated 2 years ago
• ramellose / manta
  microbial association network clustering algorithm
  ☆14Updated 2 years ago
• knights-lab / BURST
  An ultrafast optimal aligner for mapping large NGS data to large genome databases.
  ☆57Updated last year
• eclarke / swga
  Select primer sets for selective whole genome amplification (SWGA)
  ☆32Updated 6 years ago
• kaanb93 / q2-krona
  Implementation of Krona to QIIME2
  ☆16Updated last year
• snayfach / IGGdb
  Database of genomes integrated from the gut microbiome and other environments
  ☆45Updated 2 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆126Updated this week
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• Gibbons-Lab / medi
  Metagenomic Estimation of Dietary Intake and Content.
  ☆38Updated 9 months ago
• PathoScope / PathoScope
  Pathoscope: Species identification and strain attribution with unassembled sequencing data
  ☆60Updated 6 years ago
• deng-lab / viroprofiler
  A containerized bioinformatics pipeline for viral metagenomic data analysis
  ☆37Updated last year
• biocore / songbird
  Vanilla regression methods for microbiome differential abundance analysis
  ☆60Updated 5 years ago
• bsmith89 / StrainFacts
  Factorize metagenotypes to infer strains and their abundances
  ☆12Updated last year
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆60Updated 4 months ago
• aomlomics / tourmaline
  Amplicon sequence processing workflow using QIIME 2 and Snakemake
  ☆46Updated last month
• bioinfo-ut / PhenotypeSeeker
  Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains
  ☆21Updated 3 weeks ago
• Golob-Minot / geneshot
  ☆29Updated last year
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆30Updated 3 weeks ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆82Updated 5 months ago
• GATB / simka
  Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.
  ☆51Updated 3 years ago